View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_44 (Length: 238)
Name: NF6157_low_44
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_44 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 36627165 - 36627385
Alignment:
| Q |
18 |
gccaacatagacgaaaaccaaaatatgttgcctacacattgttcagacaatggaggatccattcttctacgaagatcgacaatcatgctaaacattgccg |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36627165 |
gccaacatagacgaaaaccaaaatatgttccctacacaatgttcagacaatggaggaaccattcttctacgaagatcgacaatcatgctaaacattgccg |
36627264 |
T |
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| Q |
118 |
tctggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtgggagaatgcatggaactagaagtcaccac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36627265 |
tctggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtacttgcgtgggagaatgcatggaactagaagtcaccat |
36627364 |
T |
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| Q |
218 |
tgccttaagcgacttaatcat |
238 |
Q |
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||||||||| ||||||||||| |
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| T |
36627365 |
tgccttaagagacttaatcat |
36627385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 36621945 - 36622160
Alignment:
| Q |
23 |
catagacgaaaaccaaaatatgttgcctacacattgttcagacaatggaggatccattcttctacgaagatcgacaatcatgctaaacattgccgtctgg |
122 |
Q |
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||||||||||||||||| |||||| |||||||||| ||||||||| |||||| |||||||| | || |||| |||| |||| |||| ||||||||| |
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| T |
36621945 |
catagacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgtaaaacgaagccgtctgg |
36622044 |
T |
|
| Q |
123 |
aaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtgggagaatgcatggaactagaagtcaccactgcct |
222 |
Q |
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| T |
36622045 |
aaatttaaccccattattgatacagcatgcttgtaaatccatgcaattacaacttgcacgcgtgtgggagaaggcatggaactagaagttaccattgcct |
36622144 |
T |
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| Q |
223 |
taagcgacttaatcat |
238 |
Q |
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|||| ||||| ||||| |
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| T |
36622145 |
taagagacttgatcat |
36622160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 36632737 - 36632945
Alignment:
| Q |
18 |
gccaacatagacgaaaaccaaaatatgttgcctacacattgttcagacaatggaggatccattcttctacgaagatcgacaatcatgctaaacattgccg |
117 |
Q |
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||||||||| ||||| |||| |||||| ||| |||||| ||| ||||||||||||||||||||| | | ||||| ||| ||||| |||| |||| |
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| T |
36632737 |
gccaacatatacgaattgcaaactatgttccctgcacatttttccgacaatggaggatccattctttttctaagatttacagccatgcaaaacgacgccg |
36632836 |
T |
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| Q |
118 |
tctggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtgggagaatgcatggaactagaagtcaccac |
217 |
Q |
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| T |
36632837 |
tttggaaatttaaccccattattgaaactgtatgcttgtaaatccatgcagttacaacttgtacatgtgtgggagaatgcatgaaactagaagttaccat |
36632936 |
T |
|
| Q |
218 |
tgccttaag |
226 |
Q |
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||||||||| |
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| T |
36632937 |
tgccttaag |
36632945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 34329799 - 34329609
Alignment:
| Q |
21 |
aacatagacgaaaaccaaaatatgttgcctacacattgttcagacaatggaggatccattcttctacgaagatcgacaatcatgctaaacattgccgtct |
120 |
Q |
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||||||||||| |||||||||||||| |||||||||| ||||||||| |||||| |||||||| | |||| ||| ||| ||| ||||||| || |||| |
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| T |
34329799 |
aacatagacgagaaccaaaatatgttccctacacatttttcagacaacggaggaaccattcttttgcgaaaatcaacagccatactaaacaatgatgtct |
34329700 |
T |
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| Q |
121 |
ggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtgggagaatgcatggaactagaagt |
211 |
Q |
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| T |
34329699 |
tgaaatttaatcccgttattgaaaccgtgcatttgtaaatccatgcagtcacaacttgtacacgtgtgggagaatgcaccgaactagaagt |
34329609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 34320889 - 34320671
Alignment:
| Q |
23 |
catagacgaaaaccaaaatatgttgcctacacattgttcagacaatggaggatccattcttctacgaagatcgacaatcatgctaaacattgccgtctgg |
122 |
Q |
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||||||||| ||||||| ||||| |||||||| | ||||||||||| |||| |||||||| | |||||||| ||| ||||||||| | ||||||||| |
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| T |
34320889 |
catagacgagaaccaaacaatgtttcctacacacttttcagacaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctgg |
34320790 |
T |
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| Q |
123 |
aaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtggga---gaatgcatggaactagaagtcaccactg |
219 |
Q |
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|||||||| ||||||| |||||| ||| |||| ||||||||||||||||| ||||||| || | ||| |||||||| ||||||||||| ||| || |
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| T |
34320789 |
aaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttgccattg |
34320690 |
T |
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| Q |
220 |
ccttaagcgacttaatcat |
238 |
Q |
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| T |
34320689 |
ccttaagggacttgatcat |
34320671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 34333860 - 34333826
Alignment:
| Q |
60 |
tcagacaatggaggatccattcttctacgaagatc |
94 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
34333860 |
tcagacaatggaggaaccattcttctacgaagatc |
34333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 45306655 - 45306749
Alignment:
| Q |
122 |
gaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtactcgcgtgggagaatgcatggaactagaagtcacca |
216 |
Q |
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||||||||| || ||| |||||| |||||||||| |||||||||||||||||| |||| || |||||||||| ||| |||| ||||| |||| |
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| T |
45306655 |
gaaatttaatccaattgctgaaaccgcatgcttgtgcatccatgcagttacaactagtacgcgtgtgggagaatacataaaacttgaagttacca |
45306749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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