View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_45 (Length: 237)
Name: NF6157_low_45
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_45 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 4600119 - 4599898
Alignment:
| Q |
16 |
gttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaatagataa |
115 |
Q |
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| T |
4600119 |
gttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaattagtaatagataa |
4600020 |
T |
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| Q |
116 |
cnnnnnnngttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggt |
215 |
Q |
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| T |
4600019 |
ctttttttgttatgattgttcaaaaatttacttatcttcaattaatgggagcaggattctcaaaacggtgtaataggcattggattaaactctcactggt |
4599920 |
T |
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| Q |
216 |
ttaaaccgtactcaacagaccc |
237 |
Q |
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| T |
4599919 |
ttaaaccgtactcaacagaccc |
4599898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 4624295 - 4624232
Alignment:
| Q |
174 |
ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagaccc |
237 |
Q |
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| T |
4624295 |
ctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgaccc |
4624232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 4624358 - 4624296
Alignment:
| Q |
25 |
ccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcagg |
87 |
Q |
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| T |
4624358 |
ccacacacaaccaacttcttgctcatgcagatgttttcgaattgtataaaaccacatatcagg |
4624296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 25017595 - 25017518
Alignment:
| Q |
24 |
gccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacactaaaaa |
101 |
Q |
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| T |
25017595 |
gccacacacaaccaactccttgctcatgcagctgctgtcaaaatttatagaaccaatcaccaggtgcaacactgaaaa |
25017518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 25038698 - 25038631
Alignment:
| Q |
28 |
cacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgcaacac |
95 |
Q |
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| T |
25038698 |
cacacaaccaactccttgctcatgcagctgctgtcaaactttatagaaccaatcatcaggtgcaacac |
25038631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 18804206 - 18804269
Alignment:
| Q |
28 |
cacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcaggtgca |
91 |
Q |
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|||| |||| |||||| |||||||||||| |||| ||||||||||||| || ||||||||||| |
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| T |
18804206 |
cacaaaacctacttctcgctcatgcagctgctgtcaaattgtataaaacaaattatcaggtgca |
18804269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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