View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_46 (Length: 236)
Name: NF6157_low_46
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_46 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4599880 - 4599647
Alignment:
| Q |
1 |
ccgaacgcgcccttgatttcatgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacggtaattt |
100 |
Q |
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| T |
4599880 |
ccgaacgcgcccttgatttcatgtttggatggtaatgacta--ctttttttaccttttctacgacaaccatggatcacgacaaaattgtgacggtaattt |
4599783 |
T |
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| Q |
101 |
aaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagatttaccaaagttcact |
200 |
Q |
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| T |
4599782 |
aaaatcttctttatctgtttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagatttaccaaagttcact |
4599683 |
T |
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| Q |
201 |
gaagagcaatctaaaagtcttattgggtcatatgat |
236 |
Q |
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| T |
4599682 |
gaagagcaatctaaaagtcttattgggtcatatgat |
4599647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 4624207 - 4623975
Alignment:
| Q |
8 |
cgcccttgatttcatgtttggatggtaatgactatacnnnnnnnaccgtttctacgacaaccatggatcgcgacaaaattgtgacggta--atttaaaat |
105 |
Q |
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| T |
4624207 |
cgcccttgatttcatgtttggatggtaacaactatactttttg-accgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaat |
4624109 |
T |
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| Q |
106 |
cttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtgaaagat---ttaccaaagttcactga |
202 |
Q |
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| T |
4624108 |
cttctttatctgtttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgc |
4624009 |
T |
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| Q |
203 |
agagcaatctaaaagtcttattgggtcatatgat |
236 |
Q |
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| T |
4624008 |
agagcaatctaagagtcttattgggtcatatgat |
4623975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 25038291 - 25038168
Alignment:
| Q |
116 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtctttcgtg---aaagatttaccaaagttcactgaagagcaatct |
212 |
Q |
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|||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||||||| |
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| T |
25038291 |
tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct |
25038192 |
T |
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| Q |
213 |
aaaagtcttattgggtcatatgat |
236 |
Q |
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|| | ||||||||| |||| |||| |
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| T |
25038191 |
aagattcttattggctcatttgat |
25038168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 25017186 - 25017063
Alignment:
| Q |
116 |
tgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtgtcttt--cgtgaaa-gatttaccaaagttcactgaagagcaatct |
212 |
Q |
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|||||| |||||||| |||||| |||| || |||||||||||| ||||||||||||||| || |||| ||||||||||||||| ||||||||||| |
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| T |
25017186 |
tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct |
25017087 |
T |
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| Q |
213 |
aaaagtcttattgggtcatatgat |
236 |
Q |
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|| | |||||||| |||| |||| |
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| T |
25017086 |
aagatgcttattggctcatttgat |
25017063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 18804667 - 18804828
Alignment:
| Q |
71 |
tggatcgcgacaaaattgtgacggtaatttaaaatcttctttatctgtttgaaggtttatacagccactgacaaccggagagtatccagcaagcatggtg |
170 |
Q |
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| T |
18804667 |
tggatcacgacataattgcggcagtaatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtg |
18804766 |
T |
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| Q |
171 |
tctttcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcata |
232 |
Q |
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||| || || ||||||||||||||| ||||||||| | | ||||||||||||||||| |
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| T |
18804767 |
tctaatttggaaacattaccaaagttcactaaagagcaatatgagagtcttattgggtcata |
18804828 |
T |
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