View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_6 (Length: 455)
Name: NF6157_low_6
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 14895585 - 14895803
Alignment:
| Q |
19 |
atggccgtgtaaagattttggatcgttaaggaataaatgatttgaagctttcgatcgtattacaaattacattttaaagggaaaacaatgcctagtgaac |
118 |
Q |
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| T |
14895585 |
atggccgtgtaaagattttggatcgttaaggaataaatgatttgaagctttcgatcgtattacaaattacattttaaagggaaaacaatgcctagtgaac |
14895684 |
T |
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| Q |
119 |
cttgtttgaccattttcattgtgatttggaactcacctactaaaacataggcatttcaatcgccttatatttgaatcgttacattcttctgttacttgta |
218 |
Q |
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| T |
14895685 |
ctcgtttgaccattttctttgtgatttggaactcacctactaaaacataggcatttcaatcgccttatatttaaatcgttacattcttctgttacttgta |
14895784 |
T |
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| Q |
219 |
taaacagtttaccttttac |
237 |
Q |
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| T |
14895785 |
taaacagtttaccttttac |
14895803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 238 - 448
Target Start/End: Original strand, 14897618 - 14897828
Alignment:
| Q |
238 |
atgcatcgtccttaccaactaattatgctcacggggatccgcatttatacatttgaaatcgggtacggcacgtagaatttacctaaaataccagaaaatt |
337 |
Q |
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| T |
14897618 |
atgcattgtccttaccaactaattgtgctcacggggatccgcatttatacatttgaaatcgggtgcggcacgtggaatttacctaaaataccagaaaata |
14897717 |
T |
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| Q |
338 |
gaaaacatccgaaaatatatatattcgcacattgctctctcgtatattggttgtctttctctgtcccggactttgttttactttcatatttcttactttt |
437 |
Q |
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| T |
14897718 |
gaaaacatccgaaaaaatatatattcgcacattgctctctcgtatattggttgtctttctctgtcccggactttgttttactttcatatttcttactttt |
14897817 |
T |
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| Q |
438 |
agttcatttca |
448 |
Q |
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| T |
14897818 |
agttgatttca |
14897828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 14872729 - 14872952
Alignment:
| Q |
19 |
atggccgtgtaaagattttggatcgttaaggaataaatgatttgaagctttcgatc--gta--ttacaaa-ttacattttaaagggaaaacaatgccta- |
112 |
Q |
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| T |
14872729 |
atggccgcgtaaagattttggatcgttctggaataaatgatttgaagccttcaataatgtaagttacaaaattacattttaaagggaaaacagtgccttt |
14872828 |
T |
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| Q |
113 |
gtgaaccttgtttgaccattttcattgtgatttggaactcacctactaaaacataggcatttcaatcgccttatatttgaatcgttacattcttctgtta |
212 |
Q |
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| T |
14872829 |
gtggaccctgttcgaccattttctttgcgatttggagctcgcccactaaaac-taggcattttaatcgccttatattcaaaccgttacatttttctgtta |
14872927 |
T |
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| Q |
213 |
cttgtataaacagtttaccttttac |
237 |
Q |
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| T |
14872928 |
cttgtataaacagtttaccttttac |
14872952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 14868762 - 14868804
Alignment:
| Q |
28 |
taaagattttggatcgttaaggaataaatgatttgaagctttc |
70 |
Q |
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| T |
14868762 |
taaagattttgggtcgttctggaataaatgatttgaagctttc |
14868804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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