View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_8 (Length: 439)
Name: NF6157_low_8
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 195 - 432
Target Start/End: Complemental strand, 37841588 - 37841351
Alignment:
| Q |
195 |
aactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaat |
294 |
Q |
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| T |
37841588 |
aactacaaaacccaccctttgaggtcattcgaacatgagagttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaat |
37841489 |
T |
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| Q |
295 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37841488 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatg |
37841389 |
T |
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| Q |
395 |
ttcattcattatctcacgtagaaaagatgccgtctctg |
432 |
Q |
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| T |
37841388 |
ttcattcattatctcacgtagaaaagatgccgtttctg |
37841351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 37841778 - 37841719
Alignment:
| Q |
20 |
tgttccatgcaactaatttcttttctttcaatcatcatttattctcatacacattactat |
79 |
Q |
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| T |
37841778 |
tgttccatgcaactaatttctttcatttcaatcatcatttattctcatacacattactat |
37841719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 37845365 - 37845294
Alignment:
| Q |
194 |
caactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcact |
265 |
Q |
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| T |
37845365 |
caactacaaaatccaccctttaaggtcattcgtgtgtgagagttgttgttgcacaaccaaaacaaatgcact |
37845294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 190 - 424
Target Start/End: Original strand, 38380666 - 38380900
Alignment:
| Q |
190 |
ttgacaactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaag |
289 |
Q |
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||||||||||||||| ||||||||| |||||||||| | ||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38380666 |
ttgacaactacaaaatccaccctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaag |
38380765 |
T |
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| Q |
290 |
aaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnn |
389 |
Q |
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| T |
38380766 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaa |
38380865 |
T |
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| Q |
390 |
tcatgttcattcattatctcacgtagaaaagatgc |
424 |
Q |
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| T |
38380866 |
tcatgttcgttcacaatctcacgtagaaaagatgc |
38380900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 190 - 424
Target Start/End: Original strand, 38389532 - 38389766
Alignment:
| Q |
190 |
ttgacaactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaag |
289 |
Q |
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||||||||||||||| ||||| ||| |||||||| | | |||||||||||| || || ||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
38389532 |
ttgacaactacaaaatccaccttttaaggtcatttgcgcgtgagagttgttgctgcacaaccaaaacagatgcattactattaagatcaggtgaagcaag |
38389631 |
T |
|
| Q |
290 |
aaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnn |
389 |
Q |
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| T |
38389632 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaa |
38389731 |
T |
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| Q |
390 |
tcatgttcattcattatctcacgtagaaaagatgc |
424 |
Q |
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| T |
38389732 |
tcatgttcgttcacaatctcacgtagaaaagatgc |
38389766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 234 - 424
Target Start/End: Original strand, 38398339 - 38398529
Alignment:
| Q |
234 |
agttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctg |
333 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
38398339 |
agttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcaccaatagcaccgagttctggaaattcactccattctg |
38398438 |
T |
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| Q |
334 |
ccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
424 |
Q |
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| T |
38398439 |
ctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38398529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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