View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6157_low_9 (Length: 427)

Name: NF6157_low_9
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6157_low_9
NF6157_low_9
[»] chr2 (24 HSPs)
chr2 (1-419)||(10372190-10372608)
chr2 (76-411)||(10348119-10348454)
chr2 (37-392)||(10353468-10353832)
chr2 (80-216)||(10336367-10336503)
chr2 (65-403)||(9321312-9321659)
chr2 (78-218)||(9316558-9316698)
chr2 (71-214)||(8572958-8573101)
chr2 (31-218)||(9283603-9283790)
chr2 (76-218)||(9357710-9357852)
chr2 (146-218)||(9275051-9275123)
chr2 (246-411)||(9292259-9292421)
chr2 (76-303)||(9329035-9329271)
chr2 (76-184)||(7115110-7115218)
chr2 (252-399)||(9283833-9283980)
chr2 (246-308)||(9357614-9357676)
chr2 (149-217)||(12005658-12005726)
chr2 (67-218)||(9292458-9292609)
chr2 (245-308)||(10336275-10336338)
chr2 (246-411)||(9060772-9060937)
chr2 (148-204)||(8579032-8579088)
chr2 (149-196)||(11987021-11987068)
chr2 (151-194)||(16269456-16269499)
chr2 (149-218)||(9060666-9060735)
chr2 (250-303)||(9274948-9275001)
[»] scaffold0667 (1 HSPs)
scaffold0667 (76-404)||(4818-5149)
[»] chr4 (1 HSPs)
chr4 (58-392)||(26575220-26575563)
[»] chr3 (2 HSPs)
chr3 (244-392)||(37462845-37462993)
chr3 (64-205)||(37463041-37463182)
[»] chr8 (1 HSPs)
chr8 (80-217)||(41966185-41966322)
[»] chr1 (1 HSPs)
chr1 (247-308)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 10372608 - 10372190
Alignment:
Q  1 tccactcaaccatcctttcacggcgggtaacaccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372608 tccactcaaccatcctttcacggcgggtaacaccagcaacattgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctc 10372509  T
Q  101 gccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttc 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372508 gccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttc 10372409  T
Q  201 tccctcttcctattcctattcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcag 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10372408 tccctcttcctattcctattcttgaccccacaatcagagcctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcag 10372309  T
Q  301 aatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccg 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372308 aatctcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccg 10372209  T
Q  401 tacgttcttcagtattatc 419  Q
    |||||||||||||||||||    
T  10372208 tacgttcttcagtattatc 10372190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 76 - 411
Target Start/End: Complemental strand, 10348454 - 10348119
Alignment:
Q  76 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 175  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  176 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgacccc-acaatcaaagcctccttatgtgttcatggcttcggttttgattct 274  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  275 ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagctaact 374  Q
     ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | |||||||||||||||| ||  ||||||||||||  ||| | ||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccacaagtgagactcttcagcttgaaaacaaact 10348156  T
Q  375 cgtggaagataattcctactatgccgtacgttcttca 411  Q
    | ||||||||||||||| |||||||||||| ||||||    
T  10348155 catggaagataattcctgctatgccgtacgatcttca 10348119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 37 - 392
Target Start/End: Complemental strand, 10353832 - 10353468
Alignment:
Q  37 caacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaaccct 136  Q
    ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | |||    
T  10353832 caacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcct 10353733  T
Q  137 tgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgacc 227  Q
       | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||   ||||      ||||     
T  10353732 aacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctgaca 10353633  T
Q  228 ccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaag 327  Q
     | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  |||| |  ||||     
T  10353632 accctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcgatctacaaaa 10353533  T
Q  328 cactttttatgatccacatgttcgactcttcagctccaaagctaactcgtggaagataattccta 392  Q
    | |||||||||||||||||||  ||||||||||||  ||| | ||||| |||||  |||||||||    
T  10353532 ccctttttatgatccacatgtcagactcttcagcttgaaaacaaactcatggaaagtaattccta 10353468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  80 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 179  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  180 aacatagggttatcccttttctccctcttcctattcc 216  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 403
Target Start/End: Complemental strand, 9321659 - 9321312
Alignment:
Q  65 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 164  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  165 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 255  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  256 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactc 355  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||  |||  |   |  || | | ||||||||||| |||||||  |||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactc 9321360  T
Q  356 ttcagctccaaagctaactcgtggaagataattcctactatgccgtac 403  Q
    |||||||| | | | ||||||||||| |||||||| | ||||||||||    
T  9321359 ttcagctctataacaaactcgtggaaaataattcccagtatgccgtac 9321312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  78 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 177  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  178 taaacatagggttatcccttttctccctcttcctattccta 218  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  71 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 170  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  171 acacccgtaaacatagggttatcccttttctccctcttcctatt 214  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  31 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 130  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  131 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 218  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  76 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 175  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  176 cgtaaacatagggttatcccttttctccctcttcctattccta 218  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  146 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 218  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 411
Target Start/End: Complemental strand, 9292421 - 9292259
Alignment:
Q  246 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 345  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||   ||  |||||  ||   | |||||   ||||||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactctttt---gatccaca 9292325  T
Q  346 tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca 411  Q
     ||  ||||||||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||    
T  9292324 ggtgagactcttcagctccaaaactaactcgtggaaaatcattcctagtatgccgtacgctcttca 9292259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 303
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  76 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 175  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  176 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 266  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  267 ttgattctttatccggcgattacaaactcctcagaat 303  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  76 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 175  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  176 cgtaaacat 184  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 399
Target Start/End: Original strand, 9283833 - 9283980
Alignment:
Q  252 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcg 351  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||   || |    |  |||| | |||||||| || ||||||   |    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgccag 9283932  T
Q  352 actcttcagctccaaagctaactcgtggaagataattcctactatgcc 399  Q
    |||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  9283933 actcttcagctccaaaacaaactcgtggaaaataattcctattatgcc 9283980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  246 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 308  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  149 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 217  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  67 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 166  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  167 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 218  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  245 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 308  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

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Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 411
Target Start/End: Original strand, 9060772 - 9060937
Alignment:
Q  246 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 345  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||  |||  ||| | |  |  |||| || |||||||||| ||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcaca 9060871  T
Q  346 tgttcgactcttcagctccaaagctaactcgtggaagataattcctactatgccgtacgttcttca 411  Q
    |||  | ||||| ||||  ||| | ||||||||||| | |||||| | ||||||||||| ||||||    
T  9060872 tgtcagtctctttagcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttca 9060937  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  148 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 204  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  149 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 196  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  151 aatcacattctggaaccctaacacccgtaaacatagggttatcc 194  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  149 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 218  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  250 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 303  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

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Target: scaffold0667 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 76 - 404
Target Start/End: Complemental strand, 5149 - 4818
Alignment:
Q  76 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 175  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  176 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 271  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  272 tctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatgttcgactcttcagctccaaagcta 371  Q
     ||||| |||||||||||||| |||||||| | ||||  ||| ||   |  |||| | |||||||||||||||||||| ||||||| ||||  ||| | |    
T  4950 cctttaaccggcgattacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttagactctttagcttgaaaacca 4851  T
Q  372 actcgtggaagataattcctactatgccgtacg 404  Q
    |||||||||| ||||||||||||||||||||||    
T  4850 actcgtggaaaataattcctactatgccgtacg 4818  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 58 - 392
Target Start/End: Complemental strand, 26575563 - 26575220
Alignment:
Q  58 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 157  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  158 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 247  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  248 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacatg 347  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatg 26575265  T
Q  348 ttcgactcttcagctccaaagctaactcgtggaagataattccta 392  Q
    || ||||||||||||  ||| | ||||| ||||| ||||||||||    
T  26575264 ttagactcttcagcttgaaaacaaactcatggaaaataattccta 26575220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 244 - 392
Target Start/End: Complemental strand, 37462993 - 37462845
Alignment:
Q  244 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatcca 343  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||   |  |||| |  |||| | ||||||||||||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttggcttctcgatctacaaaaccctttttatgatcca 37462894  T
Q  344 catgttcgactcttcagctccaaagctaactcgtggaagataattccta 392  Q
    |||||  ||||||||||||||||| | ||||||||||| ||| ||||||    
T  37462893 catgtgagactcttcagctccaaaacaaactcgtggaaaatagttccta 37462845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 37463182 - 37463041
Alignment:
Q  64 caccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgg 163  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || |||||||||   | |||   | | |||| ||||||||| |||||    
T  37463182 caccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgg 37463083  T
Q  164 aaccctaacacccgtaaacatagggttatcccttttctccct 205  Q
    ||||||||||| |||||||||  | |||||||||||||||||    
T  37463082 aaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  80 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 179  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  180 aacatagggttatcccttttctccctcttcctattcct 217  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  247 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 308  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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