View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6158_low_1 (Length: 417)
Name: NF6158_low_1
Description: NF6158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6158_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 1100757 - 1100365
Alignment:
| Q |
17 |
acaacccaccatgatcaaattcgttatgtgtgtgttcgacgcttgcatttctctaattcaccatgaccaggaattggttttacctttcatctacttactt |
116 |
Q |
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| T |
1100757 |
acaacccaccatgatcaaattcgttatgtgtgtgttcgacgcttgcatttctctaattcaccatgaccaggaattggttttacctttcatctacttactt |
1100658 |
T |
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| Q |
117 |
ttggtattgatttttgcatctcgattgttcaaccatgtctgtctattcccctaccataaaattgaaacttttgagaaatatggccattttatttccgaat |
216 |
Q |
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| T |
1100657 |
ttggtattgatttttgcatctcgattgttcaaccatgtctgtctattccactaccataaaattgaaacttttgagaaatatggccattttatttccgaat |
1100558 |
T |
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| Q |
217 |
ccaatttactcactttatctggttttgaatttggtatnnnnnnnnnnnnnnnttattgcttttgctttcccatcattgtttctggtctattgtaaattga |
316 |
Q |
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| T |
1100557 |
ccaattcactcactttatctggttttcaatttggtat-----aaaaaaaaaattattgcttttgctttcccatcattgtttctggtctattgtaaattga |
1100463 |
T |
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| Q |
317 |
acatttcatataatccaattaatttacag-------nnnnnnnngtattattttttatttatagtcaattaaaatattcagatctcaccatgatgatg |
407 |
Q |
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| T |
1100462 |
acatttcatataatccaattaatttacagaaagaaaaaaaaaaaacattattttttatttattgtcaattaaaatattcagatctcaccatgatgatg |
1100365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 11436129 - 11436224
Alignment:
| Q |
156 |
tgtctattcccctaccataaaattgaaacttttgagaaatatggccattttatttccgaatccaatttactcactttatctggttttgaatttggta |
252 |
Q |
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| T |
11436129 |
tgtctattccactaccatgaaattgaaactattgagaagtgtgg-catttcatttccaaatccaatttactcaattgatatgtatttgaatttggta |
11436224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 343
Target Start/End: Complemental strand, 55201385 - 55201314
Alignment:
| Q |
272 |
ttgcttttgctttcccatcattgtttctggtctattgtaaattgaacatttcatataatccaattaatttac |
343 |
Q |
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| T |
55201385 |
ttgcttttgaattcccctcactgtttctggtttattgtaaattgaacatttcctataatccaattaatttac |
55201314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 24162924 - 24162994
Alignment:
| Q |
272 |
ttgcttttgctttcccatcattgtttctggtctattgtaaattgaacatttcatataatccaattaattta |
342 |
Q |
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| T |
24162924 |
ttgcttttgaattcccctcactgtttctggtttattgtaaattgaacatttcctataatccaattaattta |
24162994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 39738619 - 39738524
Alignment:
| Q |
156 |
tgtctattcccctaccataaaattgaaacttttgagaaatatggccattttatttccgaatccaatttactcactttatctggttttgaatttggta |
252 |
Q |
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| T |
39738619 |
tgtctattccactgccatgaaattgaaactattgagaagtgtgg-catttcatttccaaatccaatttactaaattgatatgtatttgaatttggta |
39738524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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