View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6158_low_3 (Length: 239)
Name: NF6158_low_3
Description: NF6158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6158_low_3 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9804766 - 9805004
Alignment:
| Q |
1 |
tgagatggacatc-atcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttg |
99 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804766 |
tgagatcgacatcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttg |
9804865 |
T |
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| Q |
100 |
atggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatcttgatcattttgcatgt |
199 |
Q |
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| T |
9804866 |
atggagttttcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgt |
9804964 |
T |
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| Q |
200 |
ctttctctactttgtggttgttttttatgtgagtggtttc |
239 |
Q |
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||||||| | ||||||||||| |||||||||||||||||| |
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| T |
9804965 |
ctttctcaaatttgtggttgtcttttatgtgagtggtttc |
9805004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 9817777 - 9817929
Alignment:
| Q |
85 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt |
184 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || || |||| |
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| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacat--ttttttatcta |
9817874 |
T |
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| Q |
185 |
gatcattttgcatgtctttctctactttgtggttgttttttatgtgagtggtttc |
239 |
Q |
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| T |
9817875 |
gatcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttc |
9817929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 11788 - 11938
Alignment:
| Q |
88 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaac-ttttttcatatannnnnnnatcttga |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||| || |||| | |
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| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacat--tgttttatctata |
11885 |
T |
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| Q |
187 |
tcattttgcatgtctttctctactttgtggttgttttttatgtgagtggtttc |
239 |
Q |
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| T |
11886 |
taattttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttc |
11938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
| Q |
85 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt |
184 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| || |||| |
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| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacat--ttctttatcta |
42778804 |
T |
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| Q |
185 |
gatcattttgcatgtctttctctactttgtggttgttttttatgtgagtggtttc |
239 |
Q |
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|||||||||||| | |||||| | |||||||||| |||||| ||||||||||| |
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| T |
42778803 |
gatcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc |
42778749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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