View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6159_high_11 (Length: 253)

Name: NF6159_high_11
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6159_high_11
NF6159_high_11
[»] scaffold0544 (1 HSPs)
scaffold0544 (202-253)||(3266-3317)
[»] chr7 (19 HSPs)
chr7 (202-253)||(18871575-18871626)
chr7 (202-253)||(29795441-29795492)
chr7 (202-253)||(29799260-29799311)
chr7 (202-253)||(146778-146829)
chr7 (208-253)||(23666297-23666342)
chr7 (209-253)||(18606616-18606660)
chr7 (209-253)||(11660595-11660639)
chr7 (209-253)||(13255243-13255287)
chr7 (209-253)||(16109729-16109773)
chr7 (209-253)||(29003601-29003645)
chr7 (209-253)||(34956915-34956959)
chr7 (209-253)||(833753-833797)
chr7 (209-253)||(1198933-1198977)
chr7 (209-253)||(13850332-13850376)
chr7 (209-253)||(14421015-14421059)
chr7 (209-253)||(14565366-14565410)
chr7 (209-253)||(16572882-16572926)
chr7 (209-253)||(16592736-16592780)
chr7 (209-253)||(48742952-48742996)
[»] chr6 (9 HSPs)
chr6 (202-253)||(4476074-4476125)
chr6 (202-253)||(12941499-12941550)
chr6 (209-253)||(29417306-29417350)
chr6 (209-253)||(29848909-29848953)
chr6 (224-253)||(221418-221447)
chr6 (224-253)||(19444553-19444582)
chr6 (224-253)||(23351784-23351813)
chr6 (224-253)||(24266471-24266500)
chr6 (209-253)||(16133862-16133906)
[»] chr5 (13 HSPs)
chr5 (202-253)||(23113152-23113203)
chr5 (202-253)||(41878401-41878452)
chr5 (202-253)||(22335818-22335869)
chr5 (202-253)||(22339356-22339407)
chr5 (202-253)||(38146168-38146219)
chr5 (208-253)||(9775129-9775174)
chr5 (209-253)||(10816083-10816127)
chr5 (209-253)||(23538082-23538126)
chr5 (218-253)||(22469534-22469569)
chr5 (209-253)||(19510690-19510734)
chr5 (209-253)||(22749389-22749433)
chr5 (209-253)||(24277902-24277946)
chr5 (209-253)||(24384267-24384311)
[»] chr4 (10 HSPs)
chr4 (202-253)||(36037230-36037281)
chr4 (202-253)||(49548832-49548883)
chr4 (202-253)||(15533497-15533548)
chr4 (209-253)||(18211903-18211947)
chr4 (209-253)||(4831994-4832038)
chr4 (209-253)||(4835289-4835333)
chr4 (209-253)||(14047497-14047541)
chr4 (209-253)||(24048106-24048150)
chr4 (209-253)||(30146061-30146105)
chr4 (218-253)||(15989510-15989545)
[»] chr3 (13 HSPs)
chr3 (202-253)||(9532536-9532587)
chr3 (202-253)||(12304452-12304503)
chr3 (202-253)||(14764545-14764596)
chr3 (202-253)||(23372293-23372344)
chr3 (202-253)||(51299811-51299862)
chr3 (202-253)||(54519875-54519926)
chr3 (206-253)||(3802248-3802295)
chr3 (209-253)||(13026887-13026931)
chr3 (209-253)||(17548768-17548812)
chr3 (209-253)||(34853095-34853139)
chr3 (224-253)||(10834712-10834741)
chr3 (224-253)||(18899745-18899774)
chr3 (209-253)||(1989791-1989835)
[»] chr2 (11 HSPs)
chr2 (202-253)||(19663241-19663292)
chr2 (202-253)||(10686039-10686090)
chr2 (202-253)||(20260535-20260586)
chr2 (205-253)||(6261966-6262014)
chr2 (209-253)||(6478596-6478640)
chr2 (209-253)||(10040507-10040551)
chr2 (209-253)||(26895994-26896038)
chr2 (209-253)||(6482012-6482056)
chr2 (209-253)||(6485479-6485523)
chr2 (209-253)||(22702761-22702805)
chr2 (209-253)||(23374692-23374736)
[»] scaffold1427 (1 HSPs)
scaffold1427 (202-253)||(457-508)
[»] scaffold0337 (1 HSPs)
scaffold0337 (209-253)||(10581-10625)
[»] scaffold0635 (1 HSPs)
scaffold0635 (209-253)||(6519-6563)
[»] scaffold0447 (1 HSPs)
scaffold0447 (209-253)||(13687-13731)
[»] scaffold0383 (1 HSPs)
scaffold0383 (209-253)||(11682-11726)
[»] scaffold0216 (1 HSPs)
scaffold0216 (209-253)||(20994-21038)
[»] scaffold0003 (1 HSPs)
scaffold0003 (209-253)||(137305-137349)
[»] chr8 (4 HSPs)
chr8 (209-253)||(21862045-21862089)
chr8 (209-249)||(38186330-38186370)
chr8 (218-253)||(44431337-44431372)
chr8 (209-253)||(20453925-20453969)
[»] chr1 (5 HSPs)
chr1 (209-253)||(13529104-13529148)
chr1 (209-253)||(19209279-19209323)
chr1 (209-253)||(28311876-28311920)
chr1 (209-253)||(32649552-32649596)
chr1 (209-253)||(29534202-29534246)
[»] scaffold0117 (1 HSPs)
scaffold0117 (218-253)||(41535-41570)
[»] scaffold0042 (1 HSPs)
scaffold0042 (218-253)||(50480-50515)
[»] scaffold0021 (1 HSPs)
scaffold0021 (218-253)||(145803-145838)
[»] scaffold0338 (1 HSPs)
scaffold0338 (224-253)||(4434-4463)
[»] scaffold0188 (1 HSPs)
scaffold0188 (224-253)||(890-919)
[»] scaffold0825 (1 HSPs)
scaffold0825 (209-253)||(2138-2182)
[»] scaffold0607 (1 HSPs)
scaffold0607 (209-253)||(2432-2476)
[»] scaffold0413 (1 HSPs)
scaffold0413 (209-253)||(10319-10363)
[»] scaffold0026 (1 HSPs)
scaffold0026 (209-253)||(109829-109873)


Alignment Details
Target: scaffold0544 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 3266 - 3317
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3266 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 18871626 - 18871575
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18871626 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 18871575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 29795492 - 29795441
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  29795492 tggataattgtagttatcgtcgtcgttggttgaattagtaagtgttactaaa 29795441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 29799311 - 29799260
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  29799311 tggataattgtagttatcgtcgtcgttggttgaattagtaagtgttactaaa 29799260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 146829 - 146778
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  146829 tggataattgtagttatcgtcgttgttgattgaattagcaagtgttactaaa 146778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 23666297 - 23666342
Alignment:
Q  208 attgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  23666297 attgttgttatcgtcgttgttggttgaattagtaagtgttactaaa 23666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 18606660 - 18606616
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  18606660 ttgttgttatcgtcgttgttggttgaattagtaagtgttactaaa 18606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 11660639 - 11660595
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  11660639 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 11660595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 13255287 - 13255243
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13255287 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 13255243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 16109729 - 16109773
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  16109729 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 16109773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 29003645 - 29003601
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  29003645 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 29003601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 34956959 - 34956915
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  34956959 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 34956915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 833753 - 833797
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  833753 ttgttgttgtcgtcgttgttggttgaattaataagtgttactaaa 833797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 1198933 - 1198977
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  1198933 ttgttgttgtcgtcgttgttggttgaattaataagtgttactaaa 1198977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 13850332 - 13850376
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  13850332 ttgtggttgtcgtcgttgttggttgaattagtaagtgttattaaa 13850376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 14421059 - 14421015
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  14421059 ttgttgttgtcgtcgttgttggttgaattagcaagtgttactaaa 14421015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 14565410 - 14565366
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||    
T  14565410 ttgttgttatcgttgttgttggttgaattagtaagtattactaaa 14565366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 16572926 - 16572882
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  16572926 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 16572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 16592736 - 16592780
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  16592736 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 16592780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 48742996 - 48742952
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||    
T  48742996 ttgttgttgtcgtcgttgtcggttgaattagtaagtgttactaaa 48742952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 4476125 - 4476074
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4476125 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 4476074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 12941550 - 12941499
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12941550 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 12941499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 29417306 - 29417350
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  29417306 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 29417350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 29848909 - 29848953
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  29848909 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 29848953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 221447 - 221418
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  221447 ttgttggttgaattagtaagtgttactaaa 221418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 19444553 - 19444582
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  19444553 ttgttggttgaattagtaagtgttactaaa 19444582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 23351813 - 23351784
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  23351813 ttgttggttgaattagtaagtgttactaaa 23351784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 24266500 - 24266471
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  24266500 ttgttggttgaattagtaagtgttactaaa 24266471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 16133862 - 16133906
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  16133862 ttgttgttgtcgtcgttgttggttgaattaataagtgttactaaa 16133906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 23113152 - 23113203
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23113152 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 23113203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 41878401 - 41878452
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41878401 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 41878452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 22335869 - 22335818
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22335869 tggataattgtagttatcgtcgttgttggttgaattagtaactgttactaaa 22335818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 22339407 - 22339356
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22339407 tggataattgtagttatcgtcgttgttggttgaattagtaactgttactaaa 22339356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 38146168 - 38146219
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  38146168 tggataatttaagttatcgtcgttgttggttgaattagtaagtgttactaaa 38146219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 9775174 - 9775129
Alignment:
Q  208 attgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  9775174 attgttgttatcgtcgttgttggttgaattagtaagtgttactaaa 9775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 10816127 - 10816083
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  10816127 ttgtcgttgtcgtcgttgttggttgaattagtaagtgttactaaa 10816083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 23538126 - 23538082
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  23538126 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 23538082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 22469569 - 22469534
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22469569 tcgtcgttgttggttgaattagtaagtgttactaaa 22469534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 19510734 - 19510690
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  19510734 ttgttgttgtcgtcgttgttggttgaattagcaagtgttactaaa 19510690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 22749433 - 22749389
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  22749433 ttgttgttgtcgtcgttgttggttgaattagaaagtgttactaaa 22749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 24277902 - 24277946
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  24277902 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 24277946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 24384311 - 24384267
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  24384311 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 24384267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 36037281 - 36037230
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36037281 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 36037230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 49548832 - 49548883
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49548832 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 49548883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 15533548 - 15533497
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  15533548 tggataattgtagttatcgtcgtcgttggttgaattagtaagtgttactaaa 15533497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 18211947 - 18211903
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  18211947 ttgttgttatcgtcgttgttggttgaattagtaagtgttactaaa 18211903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 4831994 - 4832038
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  4831994 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 4832038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 4835289 - 4835333
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  4835289 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 4835333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 14047541 - 14047497
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  14047541 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 14047497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 24048106 - 24048150
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  24048106 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 24048150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 30146105 - 30146061
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  30146105 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 30146061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 15989545 - 15989510
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15989545 tcgtcgttgttggttgaattagtaagtgttactaaa 15989510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 9532587 - 9532536
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9532587 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 9532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 12304503 - 12304452
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12304503 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 12304452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 14764545 - 14764596
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14764545 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 14764596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 23372293 - 23372344
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23372293 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 23372344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 51299862 - 51299811
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51299862 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 51299811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 54519926 - 54519875
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54519926 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 54519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 3802295 - 3802248
Alignment:
Q  206 taattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3802295 taattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 3802248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 13026887 - 13026931
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13026887 ttgtcgttgtcgtctttgttggttgaattagtaagtgttactaaa 13026931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 17548768 - 17548812
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17548768 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 17548812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 34853095 - 34853139
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  34853095 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 34853139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 10834712 - 10834741
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  10834712 ttgttggttgaattagtaagtgttactaaa 10834741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 18899774 - 18899745
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  18899774 ttgttggttgaattagtaagtgttactaaa 18899745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 1989791 - 1989835
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  1989791 ttgttgttgtcgtcgttgttggttgaattagtaagtgttaataaa 1989835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 19663241 - 19663292
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19663241 tggataattgtagttatcgtcgttgttggttgaattagtaagtgttactaaa 19663292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 10686039 - 10686090
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10686039 tggataattgtagttatcgtcgtcgttggttgaattagtaagtgttactaaa 10686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 20260586 - 20260535
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  20260586 tggataattgtagttatcgtcgtcgttggttgaattagtaagtgttactaaa 20260535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 6261966 - 6262014
Alignment:
Q  205 ataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  6261966 ataattgtagttatcgtcgttgttggttgaattagtaactgttactaaa 6262014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 6478596 - 6478640
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  6478596 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 6478640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 10040507 - 10040551
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  10040507 ttgtggttgtcgtcgttgttggttgaattagtaagtgttactaaa 10040551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 26896038 - 26895994
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  26896038 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 26895994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 6482056 - 6482012
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  6482056 ttgttgttgtcgtcgttgttggttgaattagcaagtgttactaaa 6482012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 6485523 - 6485479
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  6485523 ttgttgttgtcgtcgttgttggttgaattagcaagtgttactaaa 6485479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 22702805 - 22702761
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||| |||||||||||||||||||||||    
T  22702805 ttgttgttgtcgtcgttgttgattgaattagtaagtgttactaaa 22702761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 23374736 - 23374692
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  23374736 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 23374692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 508 - 457
Alignment:
Q  202 tggataattgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  508 tggataattgtagttttcgtcgttgttggttgaattagtaagtgttactaaa 457  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 10581 - 10625
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  10581 ttgttgttatcgtcgttgttggttgaattagtaagtgttactaaa 10625  T

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Target: scaffold0635 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 6563 - 6519
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  6563 ttgtggttgtcgtcgttgttggttgaattagtaagtgttactaaa 6519  T

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Target: scaffold0447 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 13731 - 13687
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13731 ttgtggttttcgtcgttgttggttgaattagtaagtgttactaaa 13687  T

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Target: scaffold0383 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 11726 - 11682
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  11726 ttgtggttttcgtcgttgttggttgaattagtaagtgttactaaa 11682  T

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Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 21038 - 20994
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  21038 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 20994  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 137349 - 137305
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  137349 ttgtggttgtcgtcgttgttggttgaattagtaagtgttactaaa 137305  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 21862045 - 21862089
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  21862045 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 21862089  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 38186330 - 38186370
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttac 249  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  38186330 ttgttgttgtcgtcattgttggttgaattagtaagtgttac 38186370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 44431372 - 44431337
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44431372 tcgtcgttgttggttgaattagtaagtgttactaaa 44431337  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 20453969 - 20453925
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||||||||| |||||||    
T  20453969 ttgttgttttcgtcgttgttggttgaattagtaagtgctactaaa 20453925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 13529104 - 13529148
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13529104 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 13529148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 19209323 - 19209279
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  19209323 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 19209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 28311920 - 28311876
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  28311920 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 28311876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 32649596 - 32649552
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||    
T  32649596 ttgttgttgtcgtcgttgttggttgaattagtaagtgttactaaa 32649552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 29534246 - 29534202
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  29534246 ttgttgttgtcgtcgttgttggtttaattagtaagtgttactaaa 29534202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 41535 - 41570
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41535 tcgtcgttgttggttgaattagtaagtgttactaaa 41570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 50515 - 50480
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  50515 tcgtcgttgttggttgaattagtaagtgttactaaa 50480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 145838 - 145803
Alignment:
Q  218 tcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    ||||| ||||||||||||||||||||||||||||||    
T  145838 tcgtcgttgttggttgaattagtaagtgttactaaa 145803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 4434 - 4463
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  4434 ttgttggttgaattagtaagtgttactaaa 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 890 - 919
Alignment:
Q  224 ttgttggttgaattagtaagtgttactaaa 253  Q
    ||||||||||||||||||||||||||||||    
T  890 ttgttggttgaattagtaagtgttactaaa 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0825 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 2138 - 2182
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||||||| ||||    
T  2138 ttgttgttgtcgtcgttgttggttgaattagtaagtgttattaaa 2182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 2476 - 2432
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||||||||||| |||||    
T  2476 ttgttgttgtcgtcgttgttggttgaattagtaagtgtttctaaa 2432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 10363 - 10319
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| ||||||||||||||||||||| ||||||||    
T  10363 ttgtggttgtcgtcgttgttggttgaattagtaagtattactaaa 10319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 109873 - 109829
Alignment:
Q  209 ttgtagttatcgtcattgttggttgaattagtaagtgttactaaa 253  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||||    
T  109873 ttgttgttgtcgtcgttgttggttgaattagcaagtgttactaaa 109829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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