View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_high_13 (Length: 234)
Name: NF6159_high_13
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 48209947 - 48209755
Alignment:
| Q |
28 |
tttatttttgcttctaattgatatccttttattgttatatttaaaacaggaaccgattctggaacttgtctcagtgataagatgaacaggattattattg |
127 |
Q |
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| T |
48209947 |
tttatttttgtttctaattgatatccttttattgttatatttaaaacaggaaccgattctggaacttgtctcagtgataagatgaacaggattattattg |
48209848 |
T |
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| Q |
128 |
ataggaggaattatcttcaatttattgagaagtatcagaggaatgaaaagaagcattgaaacatttctgctcatgtatcaccttgcttctgtg |
220 |
Q |
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| T |
48209847 |
ataggaggaattatcttcaatttattgagaagtatcagaggaatgaaaagaagcattgaaacatttctgctcatgtatcaccttgcttctgtg |
48209755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 48217788 - 48217870
Alignment:
| Q |
86 |
ctggaacttgtctcagtgataagatgaacaggattattattgataggaggaattatcttcaatttattgagaagtatcagagg |
168 |
Q |
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| T |
48217788 |
ctggaacttgtcacagtgctaagatgaataggactattgttgttaggaggaattatcttcacttcatcaagaaatatcagagg |
48217870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 32586881 - 32586813
Alignment:
| Q |
100 |
agtgataagatgaacaggattattattgataggaggaattatcttcaatttattgagaagtatcagagg |
168 |
Q |
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| T |
32586881 |
agtgctaaaatgaataggactattattgtcaggaggaattatcttcactttattaagaagtatcagagg |
32586813 |
T |
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