View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_high_4 (Length: 415)
Name: NF6159_high_4
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 115 - 405
Target Start/End: Complemental strand, 39086888 - 39086601
Alignment:
| Q |
115 |
aattatgaatatgtgcttcaatggtaaaacaaagtgactatatttcttttatattaatcaaatttagagttcacatagtacaacttgaatataaataatt |
214 |
Q |
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| T |
39086888 |
aattatgaatatgtgcttcaatggtaaaacaaagtgactatatttcttttatattaatcaaatttagagttcacatagtacaacttgaatataaataatt |
39086789 |
T |
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| Q |
215 |
tagtttacaaaattatctttatcaatccaacctcttattataactacgattcatacctaacaaattacatatacgttttctaagatattttttgtttaaa |
314 |
Q |
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| T |
39086788 |
tagtttacaaaattatctttatcaatccaacctcttat---aactacgattcatacctaacaaattacatatacgttttctaagatattttttgtttaaa |
39086692 |
T |
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| Q |
315 |
taacatgatgaaatataggtataattttgcaataaagttcaaaaaatatggttgtcgtggttaaatttttcgttcacactggtgatgatgt |
405 |
Q |
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| T |
39086691 |
taacatgataaaatataggtataattttgcaataaagttcaaaaaatatggttgtcgtggttaaatttttcgttcacactagttatgatgt |
39086601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 39086964 - 39086927
Alignment:
| Q |
49 |
ttaaaagagtttgatagtggttcaatcctcaataacta |
86 |
Q |
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| T |
39086964 |
ttaaaagagtttgataggggttcaatcctcaaaaacta |
39086927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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