View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_low_1 (Length: 710)
Name: NF6159_low_1
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 28 - 537
Target Start/End: Complemental strand, 48209947 - 48209438
Alignment:
| Q |
28 |
tttatttttgcttctaattgatatccttttattgttatatttaaaacaggaaccgattctggaacttgtctcagtgataagatgaacaggattattattg |
127 |
Q |
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| T |
48209947 |
tttatttttgtttctaattgatatccttttattgttatatttaaaacaggaaccgattctggaacttgtctcagtgataagatgaacaggattattattg |
48209848 |
T |
|
| Q |
128 |
ataggaggaattatcttcaatttattgagaagtatcagaggaatgaaaagaagcattgaaacatttctgctcatgtatcaccttgcttctgtgttaagga |
227 |
Q |
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| T |
48209847 |
ataggaggaattatcttcaatttattgagaagtatcagaggaatgaaaagaagcattgaaacatttctgctcatgtatcaccttgcttctgtgttaagga |
48209748 |
T |
|
| Q |
228 |
aggagagctttgatctagctagctaatggttacgtaattaagtttcagatttcttatgttcattcttcattttttctatatgaatctctacgtaacatat |
327 |
Q |
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| T |
48209747 |
agaagagctttgatctagctagctaatggttacgtaattaagtttcagatttcttatgttcattcttcattttttctatatgaatctctacgtacaacat |
48209648 |
T |
|
| Q |
328 |
tgcagctcaatagcatacttagcatgttataagtttaatgtgcaactttgattttaacttaaatttgagtcctaaattctttaataatattgaaatgtat |
427 |
Q |
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| T |
48209647 |
tgcagctcaatagcatacttagcatgttataagtttaatgtgcaactttgattttaacttaaatttgagtccttaattctttaataatattgatatatat |
48209548 |
T |
|
| Q |
428 |
ctgaattattggttcatgaattccagtaagtgtccataaaatgaatgattgaacttaccccctagatatgcttataccaataattcagatagtaacttat |
527 |
Q |
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| T |
48209547 |
ctgaattattggttcatgaattccagtaagtgtccataaaatgaatgattgaacttaccccctagatttgcttataccaataattcagatagtaacttat |
48209448 |
T |
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| Q |
528 |
agcatgctaa |
537 |
Q |
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| T |
48209447 |
agcatgctaa |
48209438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 597
Target Start/End: Complemental strand, 48208448 - 48208390
Alignment:
| Q |
539 |
tgctaagtatgctatttattcaacattttgagccttatccattgtgaatagctctccgg |
597 |
Q |
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| T |
48208448 |
tgctaagtatgctatttattcaacattctgagccttatccattgtgaatagctctccgg |
48208390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 710
Target Start/End: Complemental strand, 48208328 - 48208275
Alignment:
| Q |
657 |
aagagaaaattgagttgaaaattgtggaactcaacattataatatatactttgg |
710 |
Q |
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| T |
48208328 |
aagataaaattgagttgaaaattgtggaactcgactttataatatatactttgg |
48208275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 48217788 - 48217870
Alignment:
| Q |
86 |
ctggaacttgtctcagtgataagatgaacaggattattattgataggaggaattatcttcaatttattgagaagtatcagagg |
168 |
Q |
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| T |
48217788 |
ctggaacttgtcacagtgctaagatgaataggactattgttgttaggaggaattatcttcacttcatcaagaaatatcagagg |
48217870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 32586881 - 32586813
Alignment:
| Q |
100 |
agtgataagatgaacaggattattattgataggaggaattatcttcaatttattgagaagtatcagagg |
168 |
Q |
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|||| ||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
32586881 |
agtgctaaaatgaataggactattattgtcaggaggaattatcttcactttattaagaagtatcagagg |
32586813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 32586710 - 32586647
Alignment:
| Q |
170 |
atgaaaagaagcattgaaacatttctgctcatgtatcaccttgcttctgtgttaaggaaggaga |
233 |
Q |
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|||| |||| ||||| ||||||| | ||||||||||||||||||||| |||| ||||||||||| |
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| T |
32586710 |
atgagaagaggcattcaaacattccagctcatgtatcaccttgcttccgtgtcaaggaaggaga |
32586647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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