View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_low_10 (Length: 274)
Name: NF6159_low_10
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8332322 - 8332582
Alignment:
| Q |
1 |
gattccattgtgaatggaaaatgtcgtatgcttaatgattgatgatgtatttatagtaaatagtttggagttgtaattttatttttatcaataaatattc |
100 |
Q |
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| T |
8332322 |
gattccattgtgaatggaaaatgttgtatgcttaatgattgatgatgtatttatagtaaatagtttggagttgtaattttatttttattaataaatattc |
8332421 |
T |
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| Q |
101 |
gtactggatgtaaagttttgtttgtatgctccttgtcctttgtagtttgattgaaaagaaaccaa---tattttannnnnnnnnataatatttattatgt |
197 |
Q |
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| T |
8332422 |
gtactggatgtaaagttttatttgtatgctccttgtcctttgtagtttgattgaaaagaaaccgatttttttttatttttttttataatatttattatgt |
8332521 |
T |
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| Q |
198 |
taaattgtcatattgtgtaaagcatatgtgtatttcagatcagattgataagcatgctttg |
258 |
Q |
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| T |
8332522 |
taaattgtcatattgtgtaaagcatatgtgtagttcagatcagattgataagcatgctttg |
8332582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 40770757 - 40770587
Alignment:
| Q |
1 |
gattccattgtgaatggaaaatgtcgtatgcttaatgattgatgatgtatttatagtaaatagtttggagttgtaattttatttttatcaataaatattc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
40770757 |
gattccattgtgaatggaaaatgttgtatgcttaatgattgatgatgtatttatagtaaatagtttgaagttgtaattttatttttattaataaatattc |
40770658 |
T |
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| Q |
101 |
gtactggatgtaaagttttgtttgtatgctccttgtcctttgtagtttgattgaaaagaaaccaatatttt |
171 |
Q |
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| T |
40770657 |
gtactggatgtaaagttttgtttgtatgctccttatcctttgtagtttgattgaaaagaaaccaatttttt |
40770587 |
T |
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