View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_low_16 (Length: 205)
Name: NF6159_low_16
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 54504983 - 54505173
Alignment:
| Q |
2 |
gtcaaagtcgccttcagtaccctcagagtcaccatcactggcaccgtcaccttcagattcagtagcttcattggccccgtcatcttcaccttcagacgag |
101 |
Q |
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| T |
54504983 |
gtcaaagtcgccttca---ccctccgagtcaccatcactggcaccgtcaccttcagattcagtagcttcattggcaccgtcatcttcaccttcagacgag |
54505079 |
T |
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| Q |
102 |
tcaccttcaccggcaccgtccccaagttcatctggtagtaaaggtggtggtgctggccatggattcttggaagtttcaatcgctatgatgatgt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54505080 |
tcaccttcaccggcaccgtccccaagttcatctggtagtaaaggtggtggtgctggccatggattcttggaagtttcaatcgctatgatgatgt |
54505173 |
T |
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