View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6159_low_2 (Length: 564)

Name: NF6159_low_2
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6159_low_2
NF6159_low_2
[»] chr1 (8 HSPs)
chr1 (20-555)||(30615525-30616060)
chr1 (51-535)||(30620296-30620780)
chr1 (119-192)||(33109266-33109339)
chr1 (119-195)||(16175120-16175196)
chr1 (119-195)||(16184166-16184242)
chr1 (119-195)||(16223556-16223632)
chr1 (350-405)||(33115532-33115587)
chr1 (119-192)||(33115301-33115374)
[»] chr3 (1 HSPs)
chr3 (113-259)||(37315771-37315917)
[»] chr7 (2 HSPs)
chr7 (71-300)||(38893318-38893547)
chr7 (119-189)||(38884174-38884244)


Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 555
Target Start/End: Complemental strand, 30616060 - 30615525
Alignment:
Q  20 cgtagaacagtctatggaatcactctaaacattatgattatttgttccctaggttctggtctttcatttggacatgaaccaaaaatggtgttgggaactc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30616060 cgtagaacagtctatggaatcactctaaacattatgattatttgttccctaggttctggtctttcatttggacatgaaccaaaaatggtgttgggaactc 30615961  T
Q  120 tttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaatactcaaacnnnnnnncacgtggcgc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||    
T  30615960 tttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaatactcaaacaaaaaaacacgtggggc 30615861  T
Q  220 gtttgtagctgcagtttttgctatgcagggttttggaattgtagcaggtggtgtatttgctatcatagtatcagttgcatttaaatcgaaattcgatgca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30615860 gtttgtagctgcagtttttgctatgcagggttttggaattgtagcaggtggtgtatttgctatcatagtatcagttgcatttaaatcgaaattcgatgca 30615761  T
Q  320 ccgccttacgtggttgatcctacgggttcaactgttccggaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgtattgactt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30615760 ccgccttacgtggttgatcctacgggttcaactgttccggaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgcattgactt 30615661  T
Q  420 attattcaagatctacaatgcctgaaaccgcgcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaagat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30615660 attattcaagatctacaatgcctgaaaccgcgcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaagat 30615561  T
Q  520 ggatattaaagctgaacctctaaaagatgatgatgt 555  Q
    ||||||||||||||||||||||||||||||||||||    
T  30615560 ggatattaaagctgaacctctaaaagatgatgatgt 30615525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 51 - 535
Target Start/End: Complemental strand, 30620780 - 30620296
Alignment:
Q  51 ttatgattatttgttccctaggttctggtctttcatttggacatgaaccaaaaatggtgttgggaactctttgcttcttcagattctggcttggttttgg 150  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||    
T  30620780 ttatggttgtttgttccataggttctggtctttcatttggacatgaaccaaaaacagtgttgggaactctttgcttcttcagattctggcttggtttcgg 30620681  T
Q  151 tattggtggtgattatccactttctgctacaattatgtctgaatactcaaacnnnnnnncacgtggcgcgtttgtagctgcagtttttgctatgcagggt 250  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| |||       ||||||| |||||| ||||||||||||||||||||||||||    
T  30620680 tattggtggagattatccactttctgcaacaattatgtctgaatactcgaacaaaaagacacgtggtgcgtttatagctgcagtttttgctatgcagggt 30620581  T
Q  251 tttggaattgtagcaggtggtgtatttgctatcatagtatcagttgcatttaaatcgaaattcgatgcaccgccttacgtggttgatcctacgggttcaa 350  Q
    ||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||| || ||||||||  ||||||||    
T  30620580 tttggaattttagcaggtggtgtatttgctatcattgtttcaattgcatttaaatcgaaattcgatgcaccggcttacatgattgatcctttgggttcaa 30620481  T
Q  351 ctgttccggaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgtattgacttattattcaagatctacaatgcctgaaaccgc 450  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||||| ||    
T  30620480 ctgttccgcaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgcaatgacttattattcaagatctaagatgcctgaaactgc 30620381  T
Q  451 gcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaagatggatattaaagctgaa 535  Q
    ||||||||||||||||||||| ||| |||||||  ||||||  |||||||||||||||||| |||| ||||||||| ||||||||    
T  30620380 gcgttacaccgcacttgttgcaaagaatatggaacaagctgcagcagatatgtctaaggttatgaacatggatattcaagctgaa 30620296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 33109266 - 33109339
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctga 192  Q
    ||||| |||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||||||||    
T  33109266 ctttgtttcttcaggttttggcttggttttggaattggtggtgattaccctctttctgctacaattatgtctga 33109339  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 16175196 - 16175120
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaata 195  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||    
T  16175196 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaata 16175120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 16184166 - 16184242
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaata 195  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||    
T  16184166 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaata 16184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 16223556 - 16223632
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaata 195  Q
    ||||| ||||| || || ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||    
T  16223556 ctttgtttctttaggttttggcttggttttggtattggtggtgattaccctctttcagctacaatcatgtctgaata 16223632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 33115532 - 33115587
Alignment:
Q  350 actgttccggaagccgattatgtttggaggataatcttaatgtttggagcaattcc 405  Q
    ||||||||  |||| ||||||||||||||||||||||| |||||||| ||||||||    
T  33115532 actgttccacaagctgattatgtttggaggataatcttgatgtttggtgcaattcc 33115587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 33115301 - 33115374
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctga 192  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| || ||||||||    
T  33115301 ctttgtttcttcaggttctggcttggatttggaattggcggtgattaccctctttcagctactatcatgtctga 33115374  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 37315917 - 37315771
Alignment:
Q  113 ggaactctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtctgaatactcaaacnnnnnnncac 212  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||  | |||       | |    
T  37315917 ggaactctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgccaacaaaaagactc 37315818  T
Q  213 gtggcgcgtttgtagctgcagtttttgctatgcagggttttggaatt 259  Q
    ||||||||||| ||||| | |||||||||||||| || |||||||||    
T  37315817 gtggcgcgtttatagcttcggtttttgctatgcaagggtttggaatt 37315771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 300
Target Start/End: Original strand, 38893318 - 38893547
Alignment:
Q  71 ggttctggtctttcatttggacatgaaccaaaaatggtgttgggaactctttgcttcttcagattctggcttggttttggtattggtggtgattatccac 170  Q
    ||||| || ||||| ||||||||  | ||||||| |||  ||| |||||||||||||||| | || |||||||| |||||||||||||| ||||| || |    
T  38893318 ggttccggcctttcttttggacacaatccaaaaacggtcatggcaactctttgcttcttccgtttttggcttgggtttggtattggtggagattacccgc 38893417  T
Q  171 tttctgctacaattatgtctgaatactcaaacnnnnnnncacgtggcgcgtttgtagctgcagtttttgctatgcagggttttggaattgtagcaggtgg 270  Q
    |||| ||||| || ||||| || || || ||        | ||||| || ||  | |||||||| ||||| |||||||| ||||||||| | | ||||||    
T  38893418 tttcggctactataatgtcagagtattctaataagaagactcgtggtgccttcattgctgcagtctttgccatgcaggggtttggaattttgggaggtgg 38893517  T
Q  271 tgtatttgctatcatagtatcagttgcatt 300  Q
    | ||||||| |||||||| |||| ||||||    
T  38893518 tatatttgcaatcatagtttcagctgcatt 38893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 38884174 - 38884244
Alignment:
Q  119 ctttgcttcttcagattctggcttggttttggtattggtggtgattatccactttctgctacaattatgtc 189  Q
    |||||||||||| | ||||||||||| || |||||||||||||| || |||||||| ||||| || |||||    
T  38884174 ctttgcttcttccggttctggcttgggttcggtattggtggtgactacccactttcggctaccataatgtc 38884244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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