View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6159_low_3 (Length: 529)
Name: NF6159_low_3
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 54504387 - 54504855
Alignment:
| Q |
17 |
ggtgacactatcagtaagtaatagtaacacccttcttaatttccttatcttcaacataattttcttgcatatatatatcgtgtaaacaaatgttgatata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54504387 |
ggtgacactatcagtaagtaatagtaacacccttcttaatttccttatcttcaatataattttcttgcatatatatatcgtgtaaacaaatgttgatata |
54504486 |
T |
|
| Q |
117 |
ttaattgtggctccatagtatacgtaaaataaatttgataatatatactccatattgatgcatat------atattgtacagcgtttcagtacaataaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
54504487 |
ttaattgtggctccatagtatacgtaaaataaatttgataata----ctccatattgatgcatatatatatatattgtacagcatttcagtacaataaca |
54504582 |
T |
|
| Q |
211 |
aaacagaatcggtacacgaagtggaagaggaagactatgatagatgtagaataagaggagagcatgtagaccactacgacggcaatacaatggtggtgct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54504583 |
aaacagaatcggtacacgaagtggaagaggaagactatgatagatgtggaataagaggagagcatgtagaccactacgacggcaatacaatggtggtgct |
54504682 |
T |
|
| Q |
311 |
taagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgggtttaaagctagctgttgttgttatggcagctcccatactttct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
54504683 |
taagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgggtttaaagctagctgttgttgttatggtagctcccgtactttct |
54504782 |
T |
|
| Q |
411 |
tcccctcctccgccaccttcaccacccacgccttggtcatcaactccaattcctcatcctcggaaacgttcac |
483 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
54504783 |
tcccctcctccgccgccttcaccacccacgcctcggtcatcaactccaattcctcatcctccgagacgttcac |
54504855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 450 - 521
Target Start/End: Original strand, 54504921 - 54504998
Alignment:
| Q |
450 |
tcaactccaattcctcatcctcggaaacgttcaccagtttcac------catcaccatcactgtcaaagtcgccttca |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54504921 |
tcaactccaattcctcatcctcggaaacgttcaccagcttcaccatcaccatcaccatcactgtcaaagtcgccttca |
54504998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 388
Target Start/End: Original strand, 54496539 - 54496660
Alignment:
| Q |
267 |
ggagagcatgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgg |
366 |
Q |
| |
|
||||| ||||| || ||| |||||||||| || | ||| |||||| | |||| |||| || |||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
54496539 |
ggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgg |
54496638 |
T |
|
| Q |
367 |
gtttaaagctagctgttgttgt |
388 |
Q |
| |
|
| |||||||| ||||| ||||| |
|
|
| T |
54496639 |
gattaaagctggctgtcgttgt |
54496660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University