View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6159_low_7 (Length: 309)
Name: NF6159_low_7
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 40994836 - 40994559
Alignment:
| Q |
19 |
atcaacttgtagaacgattgataatttgagtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtg |
118 |
Q |
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| T |
40994836 |
atcaacttgtagaacgattgataatttgagtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtg |
40994737 |
T |
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| Q |
119 |
gtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaaggg |
218 |
Q |
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| T |
40994736 |
gtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaaggg |
40994637 |
T |
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| Q |
219 |
ctatagaagaggtagacattgatttttctctagaatcggagtttcatgaacgtggcaatgaactctgccaaatccttc |
296 |
Q |
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| T |
40994636 |
ctatagaagaggtatacattgatttttctctagaatcggagtttcatgaacgtggcaatgaactctgccaaatccttc |
40994559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 40986941 - 40986834
Alignment:
| Q |
97 |
acttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctggggctgtgttt |
196 |
Q |
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|||||| |||| |||| ||||| |||||||||||||| | ||| | ||| ||| |||||||||||||||||| |||||| |||||||||| ||||||| |
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| T |
40986941 |
acttgggttaaaaagaatggtgctaaacaagtgtgatacacagtgtatcaaattagatgcaccaaatcttaaattcttcaagtattctggggatgtgttt |
40986842 |
T |
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| Q |
197 |
acttcaga |
204 |
Q |
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| T |
40986841 |
acttcaga |
40986834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 21179968 - 21180245
Alignment:
| Q |
19 |
atcaacttgtagaacgattgataatttgagtcttgagaaatgtttgaatttggcaaactttgatttgggagatgaaccacttggattaacaagattggtg |
118 |
Q |
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||||| |||||| |||||||| | ||||| |||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179968 |
atcaatttgtaggacgattgaaagtttgaatcttaagaaatgctggaatttggcgaactttgatttgggagatgaaccacttggattaacaagattggtg |
21180067 |
T |
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| Q |
119 |
gtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctggggctgtgtttacttcagatataaatgtaaggg |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||| |||| |
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| T |
21180068 |
gtaaacaagtgtgattctgagtatttcatatttaatgcaccaaatctgaaatacttcaaatattctggagttgtgtttacttcagatattaatgttaggg |
21180167 |
T |
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| Q |
219 |
ctatagaagaggtagacattgatttttctctagaatcggagtttcatgaacgtggcaatgaactctgccaaatccttc |
296 |
Q |
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|||||||||||||||||||||||||||||| |||||| || || ||||||||||||| ||||||||||||||||||| |
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| T |
21180168 |
ctatagaagaggtagacattgatttttctcaagaatcagaattcaatgaacgtggcaacgaactctgccaaatccttc |
21180245 |
T |
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