View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6159_low_9 (Length: 294)
Name: NF6159_low_9
Description: NF6159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6159_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 38174684 - 38174952
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38174684 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
38174783 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38174784 |
agttaagaatattgtagaatacagcttttatttccatcgaagggaaaaagaaaaaaaaaaatgtcctaaatagatttgtcgactctctgatatttatcac |
38174883 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaat |
279 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38174884 |
tggttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaat |
38174952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 38201908 - 38202176
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38201908 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
38202007 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38202008 |
agttaagaatattgtagaatacagcttttatttccatcgaagggaaaaagaaaaaaaaaaatgtcctaaatagatttgtcgactctctgatatttatcac |
38202107 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaat |
279 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38202108 |
tggttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaat |
38202176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 38165229 - 38164966
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38165229 |
ttattcttcggattgaagtttccagaaccgtttgatttctgtttagtcacagatccatacacggaaaatcaggcaaacacgaaaaaatagtcaaacccag |
38165130 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| | |||||| |||| |
|
|
| T |
38165129 |
agttaagaatattgtagaatacagcttttatttccatcgaaggga----aaaaaaacaatatgtcctaaacagatttgtcggctcac-catatttttcac |
38165035 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaat |
279 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38165034 |
tcgttgtttaattctgacacatcatattttaattattactctatcaaaatcaattcttatgcttgcaat |
38164966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 38240923 - 38241062
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||| |||||| ||||| || |||| |
|
|
| T |
38240923 |
ttattcatcggattgaagtttccagaaccgtttgacttctgtttattcgcagatccatacacggaaaatcagacaaacaagaaaaaatagtcaaatccag |
38241022 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagg |
153 |
Q |
| |
|
|||| |||||||| |||| || ||||||||||||||||||| |
|
|
| T |
38241023 |
agtt---aatattgtcgaatgcaacttttatttccatcgaagg |
38241062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 11589042 - 11588958
Alignment:
| Q |
67 |
atacacggaaaatcaggcaaacacgaaaaagtagtctaacccagagttaagaatattgtagaatacagcttttatttccatcgaagg |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
11589042 |
atacacagaaaatcaggcaaacacgaaaaactagtc-aacccagagttacaaatattgtagaataca-attttatttccatcgaagg |
11588958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University