View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6160_high_2 (Length: 310)
Name: NF6160_high_2
Description: NF6160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6160_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 37787297 - 37787577
Alignment:
| Q |
13 |
cagacgaaacaactctcttcatagaatagaataatgacagtcacaaaacgataccttgaatgaacacacctggcaaaatcatcttgatgaacccaagaag |
112 |
Q |
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| T |
37787297 |
cagacgaaacaactttcttcatagaatagaataatgacagtcacaaaacgataccttgaatgaacacacctggcaaaatcatcttgatgaacccaagaag |
37787396 |
T |
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| Q |
113 |
aaaacgacccttgatttgaaaaacgacgagatgaaagaggaaaagaaccgaagaaaacaaattatgttgtaagaagtaattgagatcgcaaacaatatct |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37787397 |
aaaacgaccctttatttgaaaaacgacgagatgaaagaggaaaagaaccgaagaaaaaaaattatgttgtaagaagtaattgagatcgcaaacagtatct |
37787496 |
T |
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| Q |
213 |
tccagagaagaatttttcgatttgtaaattgttggagcaagtgagagagattaaataattgaaagtttatgtgtccatctt |
293 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37787497 |
tcaagagaagaatttttcgatttgtaaattgttggagaaagtgagagagattaaataattgaaagtttatgtgtccatctt |
37787577 |
T |
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