View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6160_high_5 (Length: 261)
Name: NF6160_high_5
Description: NF6160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6160_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 47544209 - 47544436
Alignment:
| Q |
18 |
cacttgtgttataagtgtgtgtttacttaaattgcttatccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatc |
117 |
Q |
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| T |
47544209 |
cacttgtgttataagtgtgtgtttgcttaaatcgcttatccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatc |
47544308 |
T |
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| Q |
118 |
agctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaacacaggtctgcatgcatgctttttaaatccaagtcttatgccttctctta |
217 |
Q |
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| T |
47544309 |
agctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaacacaggtctgcatgcatgctttttaaatccaagtcttatgccttctctta |
47544408 |
T |
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| Q |
218 |
tctgatctctgtatccatcctaattagt |
245 |
Q |
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| T |
47544409 |
tctgatctctgtatccatcctaattagt |
47544436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 245
Target Start/End: Original strand, 47528128 - 47528303
Alignment:
| Q |
70 |
taatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaaca |
169 |
Q |
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|||||||| |||||||||||||| |||||||||| |||||||||||||||| ||| || ||| |||||| |||| | ||||||||||||||| |
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| T |
47528128 |
taatgcctaatgacattgccttt-caggatgctctctaatagggaatcagctagacgctcaagacgaagaaagcaagctcatttaactgagcttgaaaca |
47528226 |
T |
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| Q |
170 |
caggtctgcatgcatg-ctttttaaatccaagtcttatgccttctcttatctgatctctgtatccatcctaattagt |
245 |
Q |
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| T |
47528227 |
caggtcagcatgcatgtttttttagatccatttcttctgcattttcttctctgatctctatgtccatcttaattagt |
47528303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 47537849 - 47537891
Alignment:
| Q |
203 |
ttatgccttctcttatctgatctctgtatccatcctaattagt |
245 |
Q |
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| T |
47537849 |
ttatgccttctattctctgatctctgtatccatcttaattagt |
47537891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 10281722 - 10281666
Alignment:
| Q |
37 |
tgtttacttaaattgcttatccaaacatggtcttaatgccttatgacattgcctttt |
93 |
Q |
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|||||| |||||||| ||||||||||||| ||||||| || |||||| |||||||| |
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| T |
10281722 |
tgtttaattaaattgtttatccaaacatgatcttaatatctaatgacactgcctttt |
10281666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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