View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6160_low_3 (Length: 299)
Name: NF6160_low_3
Description: NF6160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6160_low_3 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 299
Target Start/End: Original strand, 49296879 - 49297142
Alignment:
| Q |
38 |
accaagagggagcgagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49296879 |
accaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
49296978 |
T |
|
| Q |
138 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcac---caggctcacacaaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49296979 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatc |
49297078 |
T |
|
| Q |
235 |
tacttaataataataagttgaccttttttggttatatattatatagagaagcaatgttgagttaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
49297079 |
tacttaataataataagttgaccttttttggttatata-tatatagagaggcaatgttgagttaa |
49297142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 299
Target Start/End: Original strand, 49289928 - 49290191
Alignment:
| Q |
38 |
accaagagggagcgagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49289928 |
accaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
49290027 |
T |
|
| Q |
138 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcac---caggctcacacaaatc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49290028 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatc |
49290127 |
T |
|
| Q |
235 |
tacttaataataataagttgaccttttttggttatatattatatagagaagcaatgttgagttaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
49290128 |
tacttaataataataagttgaccttttttggttatata-tatagagagaggcaatgttgagttaa |
49290191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 49303609 - 49303788
Alignment:
| Q |
38 |
accaagagggagcgagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
137 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303609 |
accaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagcc |
49303708 |
T |
|
| Q |
138 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303709 |
aatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
49303788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 6567938 - 6567878
Alignment:
| Q |
103 |
ctgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaa |
163 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
6567938 |
ctgtgttcattggtggtgagcttgttggtggagctaatgaagttatgagccttcaccttaa |
6567878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University