View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6160_low_4 (Length: 269)
Name: NF6160_low_4
Description: NF6160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6160_low_4 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 26912 - 27139
Alignment:
| Q |
16 |
caaattcatcaaattaagtgaatttgtaatattcttagttacatgaataatagaatattaatacttacttttggtacaaattaaagattcgccattccag |
115 |
Q |
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| T |
26912 |
caaattcatcaaattaagtgaatttgtaatattcttagttacatgaat--------attaatacttacttttggtacaatttaaagattcgccattccag |
27003 |
T |
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| Q |
116 |
ttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacagagttattacagatgggttcggaaggtg |
215 |
Q |
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| T |
27004 |
ttatagtttgcattgcaaagacacctctttcctttactacaagtagaatggttccagccatggcaatcaacagagttattacagatgggttcggaaggtg |
27103 |
T |
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| Q |
216 |
gttcccaactaactacaagttgttcagagcacgtat |
251 |
Q |
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| T |
27104 |
gttcccaactaacttcaagttgttcagagcacgtat |
27139 |
T |
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Target: scaffold0280 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 1838 - 1980
Alignment:
| Q |
104 |
tcgccattccagttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacagagttattacagatgg |
203 |
Q |
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| T |
1838 |
tcgccactccatttatactttgcattgcaaagacacttgtttcctttactacaggtagaatgtttccaaccatagaaatcaacaaagttatcacaaacga |
1937 |
T |
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| Q |
204 |
gttcggaaggtggttcccaactaactacaagttgttcagagca |
246 |
Q |
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| T |
1938 |
gttcggaaggtggatcccaactaacttccacttgttcagagca |
1980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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