View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6161_high_11 (Length: 327)

Name: NF6161_high_11
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6161_high_11
NF6161_high_11
[»] chr5 (1 HSPs)
chr5 (1-308)||(40801582-40801889)
[»] chr6 (1 HSPs)
chr6 (1-307)||(18701143-18701449)
[»] chr8 (4 HSPs)
chr8 (4-135)||(23126087-23126218)
chr8 (146-307)||(5461023-5461184)
chr8 (1-45)||(29633943-29633987)
chr8 (1-45)||(40389878-40389922)
[»] chr4 (1 HSPs)
chr4 (224-304)||(50379400-50379480)
[»] chr2 (1 HSPs)
chr2 (43-89)||(24864640-24864685)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-45)||(83654-83698)
[»] chr3 (1 HSPs)
chr3 (100-187)||(6508037-6508122)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 40801889 - 40801582
Alignment:
Q  1 tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaac 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  40801889 tagtatgaaatagaaaatcattttgaacacttttttcttgattaatggtagaaccttgatgcacattgatacttttcgccgatggccaatgacgacaaac 40801790  T
Q  101 cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40801789 cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca 40801690  T
Q  201 caatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattcctt 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40801689 caatcttagtttttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactctgtttcaggccattcctt 40801590  T
Q  301 aagaaact 308  Q
    ||||||||    
T  40801589 aagaaact 40801582  T

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Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 18701143 - 18701449
Alignment:
Q  1 tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18701143 tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaac 18701242  T
Q  101 cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca 200  Q
    | |||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18701243 catccccttttctcatttctcttcctcacaagagaaagaccaacgttctaacaccgactctatgtggctttcatagtcctgctgcctatatcaaatatca 18701342  T
Q  201 caatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattcctt 300  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  18701343 caatcttagattttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactctatttcaggccattcctt 18701442  T
Q  301 aagaaac 307  Q
    |||||||    
T  18701443 aagaaac 18701449  T

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Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 23126218 - 23126087
Alignment:
Q  4 tatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaacctt 103  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23126218 tatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacctt 23126119  T
Q  104 ccccttttctcatttctcttcctcaaaggaga 135  Q
    ||||||||||||||||||||||||||||||||    
T  23126118 ccccttttctcatttctcttcctcaaaggaga 23126087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 307
Target Start/End: Original strand, 5461023 - 5461184
Alignment:
Q  146 ttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcacaatcttagtttttccattacagaaacattgttgtgatgctccgt 245  Q
    |||||||||| ||| | ||  ||||| ||||| ||| ||| | || || ||||| |||||| ||||||||||||||| |||| ||||||  | |||||||    
T  5461023 ttccaacaccgactatgtgctgcttttatagtactgttgcatgtaccatatatcccaatctcagtttttccattacaaaaacgttgttgcaaagctccgt 5461122  T
Q  246 tgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaagaaac 307  Q
     |||| |    |||||||| ||||||| | ||  ||||||||| || ||||||| |||||||    
T  5461123 cgataatccaaatttcttcctatttttttgatctctttgtttcgggacattcctcaagaaac 5461184  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29633987 - 29633943
Alignment:
Q  1 tagtatgaaatagaaaatcattttgaacactttcttcttgattaa 45  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||    
T  29633987 tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa 29633943  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40389922 - 40389878
Alignment:
Q  1 tagtatgaaatagaaaatcattttgaacactttcttcttgattaa 45  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||    
T  40389922 tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa 40389878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 50379400 - 50379480
Alignment:
Q  224 aaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaaga 304  Q
    ||||||||||| |||||||||||||||||    |||||||| ||||||||||||  |  |||||||| |||||||| ||||    
T  50379400 aaacattgttgcgatgctccgttgatattcccgatttcttcctatttttgttatctcactgtttcagaccattcctcaaga 50379480  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 24864640 - 24864685
Alignment:
Q  43 taatggtagaaccttgatgcacattgatacttttcgtcggtggccaa 89  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  24864640 taatggtagaaccttgatgcaaattgttac-tttcgtcggtggccaa 24864685  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 83698 - 83654
Alignment:
Q  1 tagtatgaaatagaaaatcattttgaacactttcttcttgattaa 45  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||    
T  83698 tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa 83654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 6508037 - 6508122
Alignment:
Q  100 ccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcct 187  Q
    |||||||||||| ||||||||||  ||| |||| ||||||||||  || | ||||| |||||||| |||| ||| ||| |||||||||    
T  6508037 ccttccccttttttcatttctctatctcgaaggcgaaagaccaa--tttccacaccgactctatgcggctgtcacagtactgctgcct 6508122  T

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