View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6161_high_12 (Length: 327)

Name: NF6161_high_12
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6161_high_12
NF6161_high_12
[»] chr3 (7 HSPs)
chr3 (232-309)||(54734254-54734334)
chr3 (137-211)||(3540235-3540309)
chr3 (158-210)||(54528979-54529031)
chr3 (137-207)||(52311849-52311919)
chr3 (164-210)||(33450063-33450109)
chr3 (158-210)||(30533901-30533953)
chr3 (166-210)||(40517554-40517598)
[»] chr2 (4 HSPs)
chr2 (137-211)||(9539080-9539154)
chr2 (141-210)||(25389856-25389925)
chr2 (164-210)||(5037302-5037348)
chr2 (166-210)||(12965052-12965096)
[»] chr1 (8 HSPs)
chr1 (154-207)||(37260932-37260985)
chr1 (158-207)||(20447029-20447078)
chr1 (158-207)||(20532792-20532841)
chr1 (158-210)||(5119054-5119106)
chr1 (154-210)||(5602947-5603003)
chr1 (165-209)||(35392134-35392178)
chr1 (137-185)||(35577526-35577574)
chr1 (154-210)||(39650199-39650255)
[»] chr6 (3 HSPs)
chr6 (158-210)||(806548-806600)
chr6 (165-211)||(7203435-7203481)
chr6 (151-210)||(6819607-6819666)
[»] chr5 (6 HSPs)
chr5 (165-210)||(3758925-3758970)
chr5 (151-211)||(16879203-16879263)
chr5 (139-210)||(40266592-40266664)
chr5 (139-210)||(25787845-25787916)
chr5 (140-210)||(3458017-3458087)
chr5 (154-210)||(40008715-40008771)
[»] scaffold0163 (1 HSPs)
scaffold0163 (154-210)||(35779-35835)
[»] scaffold0037 (1 HSPs)
scaffold0037 (154-210)||(38317-38373)
[»] chr7 (8 HSPs)
chr7 (144-207)||(25428737-25428800)
chr7 (164-209)||(23344444-23344489)
chr7 (139-207)||(23345050-23345118)
chr7 (166-210)||(26009372-26009416)
chr7 (164-210)||(36325622-36325668)
chr7 (166-210)||(19931491-19931535)
chr7 (166-210)||(26011984-26012028)
chr7 (166-210)||(28138762-28138806)
[»] chr4 (5 HSPs)
chr4 (140-210)||(28798150-28798220)
chr4 (154-210)||(33164524-33164580)
chr4 (154-210)||(36217873-36217929)
chr4 (158-210)||(38676942-38676994)
chr4 (154-210)||(40450934-40450990)
[»] chr8 (2 HSPs)
chr8 (158-210)||(35841400-35841452)
chr8 (165-210)||(14087874-14087919)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 54734254 - 54734334
Alignment:
Q  232 agcttcacggcccattactt---gttgggagttcatattagcatttagcactctactttttcctaacacacccctgcaagt 309  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734254 agcttcacggcccattactttttgttgggagttcatattagcatttagcactctactttttcctaacacacccctgcaagt 54734334  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 3540235 - 3540309
Alignment:
Q  137 caagttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaaa 211  Q
    |||||||||||| ||| | ||| | | ||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  3540235 caagttaacttacgcaagagcaatatggacatttactttgggaacgagcaaaacagttttggtaaagagcagaaa 3540309  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 54528979 - 54529031
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||    
T  54528979 attttggacatttacattgagaatgagcaaaatcattttggtaaagagcagaa 54529031  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 52311849 - 52311919
Alignment:
Q  137 caagttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    |||||||||||| ||| ||||| | | ||||||||||||| ||| |||||||||  |||||||||||||||    
T  52311849 caagttaacttacgcaggggcaatatagacatttactttgggaacgagcaaaacaattttggtaaagagca 52311919  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 33450063 - 33450109
Alignment:
Q  164 gacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||||||    
T  33450063 gacatttattttgagaatgagcaaaacagtttgggtaatgagcagaa 33450109  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 30533901 - 30533953
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| || ||||||||||| ||||||||||||||||   |||||||||||||    
T  30533901 attttggatatttactttgaaaatgagcaaaaccgttcgagtaaagagcagaa 30533953  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 40517554 - 40517598
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||  |||||||| ||||||||| ||||||||||||||    
T  40517554 catttactttaggaatgagcgaaaccgtttgggtaaagagcagaa 40517598  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 9539080 - 9539154
Alignment:
Q  137 caagttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaaa 211  Q
    |||||||||||||||| ||||| | |  |||||||||||| ||||||||||||  ||||||||||||||||||||    
T  9539080 caagttaacttatgcaggggcaatatgaacatttactttgggaatgagcaaaatagttttggtaaagagcagaaa 9539154  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 25389856 - 25389925
Alignment:
Q  141 ttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||| | ||| ||||||||| | ||||||||||||||||||||||| || |||  |||||||||||||    
T  25389856 ttaactcacgcaagggcattttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaa 25389925  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 5037348 - 5037302
Alignment:
Q  164 gacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||||||||  || || ||||||||||||||||||||||||||    
T  5037348 gacatttactttggaaacgaacaaaaccgttttggtaaagagcagaa 5037302  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 12965096 - 12965052
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||||||| |||||||| || ||||| ||||||||||||||    
T  12965096 catttactttgaaaatgagcagaaacgtttgggtaaagagcagaa 12965052  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 37260932 - 37260985
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  37260932 gggcattttggacatttactttgagaatgggcaaaaccgtttgggtaaagagca 37260985  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 20447078 - 20447029
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||| ||||    
T  20447078 attttggacatttactttgagaatgagcaaaacagtttgggtaaaaagca 20447029  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 20532841 - 20532792
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||| ||||    
T  20532841 attttggacatttactttgagaatgagcaaaacagtttgggtaaaaagca 20532792  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 5119054 - 5119106
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| ||||||||||||  |||||||||||||||||| | ||||||||||||    
T  5119054 attttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaa 5119106  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 5603003 - 5602947
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| | ||||||||||| ||||||||||| || ||| ||||||||||||||    
T  5603003 gggcattttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaa 5602947  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 35392134 - 35392178
Alignment:
Q  165 acatttactttgagaatgagcaaaaccgttttggtaaagagcaga 209  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||    
T  35392134 acatttactttgggaatgagcaaaacaatttgggtaaagagcaga 35392178  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 35577526 - 35577574
Alignment:
Q  137 caagttaacttatgcatgggcattttcgacatttactttgagaatgagc 185  Q
    ||||||||| |||| | ||||||||||||| ||||||||| ||||||||    
T  35577526 caagttaacatatgtaggggcattttcgacttttactttgggaatgagc 35577574  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 39650255 - 39650199
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| ||||||||||||  |||||||| ||||| ||| ||||| ||||||||    
T  39650255 gggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaa 39650199  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 806600 - 806548
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  806600 attttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaa 806548  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 7203481 - 7203435
Alignment:
Q  165 acatttactttgagaatgagcaaaaccgttttggtaaagagcagaaa 211  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  7203481 acatttactttgggaacgagcaaaacagttttggtaaagagcagaaa 7203435  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 6819607 - 6819666
Alignment:
Q  151 catgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||| | | |||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  6819607 catgggcaatatggacatttattttgggaacgagcaaaactgttttggtaaagagcagaa 6819666  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 3758970 - 3758925
Alignment:
Q  165 acatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  3758970 acatttactttgggaatgagtaaaaccgttttggtaaagagcagaa 3758925  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 16879263 - 16879203
Alignment:
Q  151 catgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaaa 211  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||| | |||| ||||||||    
T  16879263 catgagcattttggacatttactttgagaatgggcaaaacagtttggataaaaagcagaaa 16879203  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 40266592 - 40266664
Alignment:
Q  139 agttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggt-aaagagcagaa 210  Q
    |||||||| | ||||||||||||| | ||||||||||| ||||||||||| || ||| ||| |||||||||||    
T  40266592 agttaactcacgcatgggcattttggtcatttactttgggaatgagcaaatccatttgggtaaaagagcagaa 40266664  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 25787845 - 25787916
Alignment:
Q  139 agttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||| ||||| ||||||||| | |||||| ||||  |||||||| |||||||| | ||||||||||||    
T  25787845 agttaactcatgcaggggcattttggtcatttattttggaaatgagcataaccgtttggataaagagcagaa 25787916  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 3458087 - 3458017
Alignment:
Q  140 gttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||| | |||||||| ||||| |||||||||||||  ||||||||| || |||| ||||| ||||||||    
T  3458087 gttaacatgtgcatgggtattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaa 3458017  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 40008771 - 40008715
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| |||||||||||||||||||||| | |  |||| ||||| ||||||||    
T  40008771 gggcattttagacatttactttgagaatgagcgataatgtttaggtaatgagcagaa 40008715  T

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Target: scaffold0163 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 35835 - 35779
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| ||||||||||||||||||||||||||  |||| | ||||||||||||    
T  35835 gggcattttggacatttactttgagaatgagcaaaattgtttggttaaagagcagaa 35779  T

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Target: scaffold0037 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 38317 - 38373
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||||||||||| |||||||| |||||||| |||| |||| ||||||||||||||    
T  38317 gggcattttcgacaattactttgggaatgagcgaaacagtttgggtaaagagcagaa 38373  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25428800 - 25428737
Alignment:
Q  144 acttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    ||||| ||| ||||||||| || |||||||||| ||||||||| |||||||| |||||||||||    
T  25428800 acttacgcaggggcattttggatatttactttgggaatgagcagaaccgtttgggtaaagagca 25428737  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 23344489 - 23344444
Alignment:
Q  164 gacatttactttgagaatgagcaaaaccgttttggtaaagagcaga 209  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||    
T  23344489 gacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 23345050 - 23345118
Alignment:
Q  139 agttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagca 207  Q
    |||||||||| ||||||||| | |  ||||||| |||| |||||||||||| ||||| |||||||||||    
T  23345050 agttaacttacgcatgggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagca 23345118  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 26009416 - 26009372
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  26009416 catttactttgggaatgagcaaaatcgtttgggtaaagagcagaa 26009372  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 36325668 - 36325622
Alignment:
Q  164 gacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  36325668 gacatttactttgagaacgagcaaaactgtttgagtaaagagcagaa 36325622  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 19931535 - 19931491
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||||||| |||||||||| ||| | ||||||||||||    
T  19931535 catttactttgagaacgagcaaaaccatttagataaagagcagaa 19931491  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 26011984 - 26012028
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||||    
T  26011984 catttactttgagaatgattaaaatcgtttgggtaaagagcagaa 26012028  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 28138806 - 28138762
Alignment:
Q  166 catttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||| |||||||||||| | ||| ||||||||||||||    
T  28138806 catttactttgggaatgagcaaaatcatttgggtaaagagcagaa 28138762  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 28798150 - 28798220
Alignment:
Q  140 gttaacttatgcatgggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    |||||| | |||| ||||||||| |||||||||||||||||||||| | || |||| ||||| ||||||||    
T  28798150 gttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatgagcagaa 28798220  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 33164524 - 33164580
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| ||||||||||||||||||||||  |||| ||| ||||| ||||||||    
T  33164524 gggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaa 33164580  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 36217929 - 36217873
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||| ||| ||||||||| ||||||| |||||| |||  |||||||||||||    
T  36217929 gggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaa 36217873  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 38676994 - 38676942
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| |||||||| |||| |||||||||||||||||| | ||||||| ||||    
T  38676994 attttggacatttattttgggaatgagcaaaaccgtttggataaagaggagaa 38676942  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 40450990 - 40450934
Alignment:
Q  154 gggcattttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||||||||| ||||||||| |||||||| | || |||| ||||| ||||||||    
T  40450990 gggcattttcgacttttactttgggaatgagcgatactgtttaggtaatgagcagaa 40450934  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 35841452 - 35841400
Alignment:
Q  158 attttcgacatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||| |||||||||||| | |||||||| ||| |||||||||||||||||||    
T  35841452 attttggacatttactttaaaaatgagcacaactgttttggtaaagagcagaa 35841400  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 14087874 - 14087919
Alignment:
Q  165 acatttactttgagaatgagcaaaaccgttttggtaaagagcagaa 210  Q
    ||||||| |||||||||||| ||||||||||  |||||||||||||    
T  14087874 acatttattttgagaatgagtaaaaccgtttgagtaaagagcagaa 14087919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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