View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6161_high_2 (Length: 548)

Name: NF6161_high_2
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6161_high_2
NF6161_high_2
[»] chr5 (5 HSPs)
chr5 (401-531)||(23927242-23927372)
chr5 (401-504)||(31477533-31477637)
chr5 (443-486)||(33622696-33622739)
chr5 (401-468)||(31022523-31022587)
chr5 (443-483)||(24095287-24095327)
[»] chr6 (10 HSPs)
chr6 (413-532)||(12936391-12936511)
chr6 (401-532)||(7099387-7099520)
chr6 (401-532)||(8795110-8795243)
chr6 (408-504)||(7412291-7412385)
chr6 (419-506)||(31344360-31344446)
chr6 (413-470)||(12910729-12910786)
chr6 (441-470)||(6109615-6109644)
chr6 (445-486)||(29095222-29095263)
chr6 (441-473)||(17728374-17728406)
chr6 (441-469)||(22607699-22607727)
[»] chr4 (7 HSPs)
chr4 (401-532)||(53446544-53446676)
chr4 (401-532)||(4480020-4480151)
chr4 (401-511)||(13033745-13033856)
chr4 (401-507)||(7865652-7865759)
chr4 (401-507)||(7866816-7866923)
chr4 (401-505)||(16643650-16643751)
chr4 (401-468)||(16238375-16238440)
[»] chr7 (5 HSPs)
chr7 (401-532)||(5632792-5632925)
chr7 (443-498)||(20093475-20093530)
chr7 (2-32)||(19973574-19973604)
chr7 (401-504)||(1855608-1855714)
chr7 (68-124)||(19928492-19928548)
[»] chr8 (10 HSPs)
chr8 (401-504)||(13770756-13770861)
chr8 (407-532)||(22282271-22282397)
chr8 (401-503)||(31247604-31247704)
chr8 (401-503)||(24942225-24942324)
chr8 (401-486)||(9555033-9555116)
chr8 (441-491)||(33273708-33273758)
chr8 (401-468)||(1039142-1039208)
chr8 (401-503)||(21687118-21687219)
chr8 (401-503)||(21691442-21691543)
chr8 (443-485)||(22906399-22906441)
[»] chr2 (6 HSPs)
chr2 (399-532)||(19026314-19026448)
chr2 (401-470)||(15327922-15327991)
chr2 (403-470)||(5356473-5356539)
chr2 (443-497)||(42534326-42534380)
chr2 (441-482)||(10887034-10887075)
chr2 (441-490)||(23150666-23150715)
[»] chr1 (10 HSPs)
chr1 (404-470)||(31066479-31066545)
chr1 (432-532)||(16869878-16869977)
chr1 (403-470)||(41438615-41438681)
chr1 (401-522)||(23933836-23933957)
chr1 (401-532)||(16517330-16517462)
chr1 (401-469)||(24106967-24107034)
chr1 (399-457)||(14746840-14746897)
chr1 (429-498)||(18732304-18732373)
chr1 (441-470)||(27282074-27282103)
chr1 (443-504)||(52193395-52193455)
[»] chr3 (11 HSPs)
chr3 (401-532)||(15204008-15204140)
chr3 (401-532)||(15243029-15243161)
chr3 (401-530)||(23088951-23089081)
chr3 (401-473)||(9860812-9860883)
chr3 (401-504)||(16841272-16841374)
chr3 (401-470)||(3750303-3750371)
chr3 (401-504)||(36602649-36602753)
chr3 (401-484)||(3024557-3024641)
chr3 (415-506)||(12901417-12901511)
chr3 (476-532)||(1694296-1694352)
chr3 (404-509)||(10848340-10848442)
[»] scaffold0023 (1 HSPs)
scaffold0023 (402-530)||(87302-87431)
[»] scaffold0043 (1 HSPs)
scaffold0043 (403-485)||(56758-56840)
[»] scaffold0213 (1 HSPs)
scaffold0213 (429-504)||(24315-24390)
[»] scaffold1401 (1 HSPs)
scaffold1401 (401-468)||(802-867)
[»] scaffold0062 (1 HSPs)
scaffold0062 (446-482)||(10696-10732)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 23927242 - 23927372
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgc 500  Q
    ||||||||||| ||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||| ||  |||| ||||| ||||| ||||||||    
T  23927242 caaggtagaatatctttcactctcaaacccttcattacgaacctctactgacttgagcgtcggagtgtctgcaggtacaaaccccaattcggtccaacgc 23927341  T
Q  501 tcactgaagtaccctcaccaccgtgaaccac 531  Q
    |||||||||||  |||||| |||||||||||    
T  23927342 tcactgaagtattctcacctccgtgaaccac 23927372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 401 - 504
Target Start/End: Original strand, 31477533 - 31477637
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacac-acccccattcgttccaacg 499  Q
    |||||||||||   ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||  ||||| ||||||||||| | |||||    
T  31477533 caaggtagaataaatttcactctcaaacccctcattttgaacctctacttacttgagcgtcggagtgtctgcaggtacacaacccccattcggttcaacg 31477632  T
Q  500 ctcac 504  Q
    |||||    
T  31477633 ctcac 31477637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 486
Target Start/End: Original strand, 33622696 - 33622739
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacaccccc 486  Q
    |||||||||||||||||||||||||||| ||  |||||||||||    
T  33622696 ctctactgacttgagcgtcggagtgtctgcaagtacacaccccc 33622739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 31022523 - 31022587
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 468  Q
    |||||||||||||||  | ||||||||||||||||||| ||   ||||| |||||||| |||||||||    
T  31022523 caaggtagaatctctcacgctctcaaaccccccattctaaa---ctactaacttgagcatcggagtgt 31022587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 24095327 - 24095287
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacacc 483  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  24095327 ctctactgacttgagcgtcggagtgtctgcatgcacacacc 24095287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 413 - 532
Target Start/End: Original strand, 12936391 - 12936511
Alignment:
Q  413 tctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacaccc-ccattcgttccaacgctcactgaagta 511  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||  | |||||||  |||||| |||||||||||| ||||||    
T  12936391 tctttcactctcaaacgccccattctgaacctctactaacttgagcgtcggagtgtctgcaagtgcacacccttcattcggtccaacgctcaccgaagta 12936490  T
Q  512 ccctcaccaccgtgaaccacc 532  Q
    | |||||||||||||||||||    
T  12936491 ctctcaccaccgtgaaccacc 12936511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 401 - 532
Target Start/End: Original strand, 7099387 - 7099520
Alignment:
Q  401 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaac 498  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||  |||| || ||| ||||| || ||     
T  7099387 caaggtagattctcttttcactctcaaaccccccattatgaacctctactgacttgagcgttagagtgtctgcaggtacatactcccaattcggtctaat 7099486  T
Q  499 gctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||||||||||||| |||||||||||||||||||    
T  7099487 gctcactgaagtactctcaccaccgtgaaccacc 7099520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 8795243 - 8795110
Alignment:
Q  401 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaac 498  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||  |||| || ||| ||||| || ||     
T  8795243 caaggtagattctcttttcactctcaaaccccccattatgaacctctactgacttgagcgttagagtgtctgcaggtacatactcccaattcggtctaat 8795144  T
Q  499 gctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||||||||||||| |||||||||||||||||||    
T  8795143 gctcactgaagtactctcaccaccgtgaaccacc 8795110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 408 - 504
Target Start/End: Complemental strand, 7412385 - 7412291
Alignment:
Q  408 gaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgctcac 504  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||    
T  7412385 gaatctcttttactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtctgcaggtacacacccccattcgatccaacgttcac 7412291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 506
Target Start/End: Original strand, 31344360 - 31344446
Alignment:
Q  419 actctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacaccc-ccattcgttccaacgctcactg 506  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||||||||||    
T  31344360 actctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtatgcatgtacacacccgccattcggtccaacgctcactg 31344446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 12910729 - 12910786
Alignment:
Q  413 tctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  12910729 tctttcactctcaaacgccccattctgaacctccactaacttgagcgtcagagtgtct 12910786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Original strand, 6109615 - 6109644
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtct 470  Q
    ||||||||||||||||||||||||||||||    
T  6109615 acctctactgacttgagcgtcggagtgtct 6109644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 29095222 - 29095263
Alignment:
Q  445 ctactgacttgagcgtcggagtgtctacatatacacaccccc 486  Q
    |||||||||||||||||||||||||| ||  |||||||||||    
T  29095222 ctactgacttgagcgtcggagtgtctgcaggtacacaccccc 29095263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 17728406 - 17728374
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtctaca 473  Q
    ||||||||||||||||||||| |||||||||||    
T  17728406 acctctactgacttgagcgtcagagtgtctaca 17728374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 22607727 - 22607699
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtc 469  Q
    |||||||||||||||||||||||||||||    
T  22607727 acctctactgacttgagcgtcggagtgtc 22607699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 53446676 - 53446544
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacaca-cccccattcgttccaacg 499  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||| ||  |||||| ||||| |||  |||||||    
T  53446676 caaggtagaatctttttcactctcaaacccccaattctgaacatctactgacttgagtatcggagtgtctgcaggtacacatcccccgttcagtccaacg 53446577  T
Q  500 ctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||||| |||||| |||||||||||||||||||    
T  53446576 ctcactaaagtactctcaccaccgtgaaccacc 53446544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 4480151 - 4480020
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgc 500  Q
    ||||| ||||||| ||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||  | ||||||    
T  4480151 caagggagaatctttttcactctaaaaccctccattatgaacctctactaacttgagcgtcggagtgtctacaggtacacacccccattcagttcaacgc 4480052  T
Q  501 tcactgaagtaccctcaccaccgtgaaccacc 532  Q
    ||| |||| | | |||||||||||||||||||    
T  4480051 tcattgaaattctctcaccaccgtgaaccacc 4480020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 511
Target Start/End: Original strand, 13033745 - 13033856
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacg 499  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||  |||||||||| |||||| |||||||    
T  13033745 caaggtagaatctctttcactctgaaaccccacattctgaacctctactgacttgagcgtcagagtgtctgcaggtacacacccctcattcggtccaacg 13033844  T
Q  500 ctcactgaagta 511  Q
    |||| |||||||    
T  13033845 ctcattgaagta 13033856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 7865652 - 7865759
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacg 499  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||  |||||||||| |||||| |||||||    
T  7865652 caaggtagaatctctttcactctcaaaccccctattatgaacctctactgacttgagcttcagagtgtctgcaggtacacacccctcattcggtccaacg 7865751  T
Q  500 ctcactga 507  Q
    ||||||||    
T  7865752 ctcactga 7865759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 401 - 507
Target Start/End: Original strand, 7866816 - 7866923
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacg 499  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||  |||||||||| |||||| |||||||    
T  7866816 caaggtagaatctctttcactctcaaaccccctattatgaacctctactgacttgagcttcagagtgtctgcaggtacacacccctcattcggtccaacg 7866915  T
Q  500 ctcactga 507  Q
    ||||||||    
T  7866916 ctcactga 7866923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 16643650 - 16643751
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgc 500  Q
    ||||| |||||||||  |||||||||||||||  |||||||| |||||||||||||||||| |||||| |  |  ||||| |||||||||| ||||||||    
T  16643650 caagggagaatctctcacactctcaaacccccg-ttctgaac-tctactgacttgagcgtcagagtgtatgtaggtacac-cccccattcggtccaacgc 16643746  T
Q  501 tcact 505  Q
    |||||    
T  16643747 tcact 16643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 16238440 - 16238375
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 468  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||||||||||||||||| ||||||    
T  16238440 caaggtagaatctctcacactctcaaaccctc-attctgaac-tctactgacttgagcgtcagagtgt 16238375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 401 - 532
Target Start/End: Original strand, 5632792 - 5632925
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccc-cattctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaac 498  Q
    ||||||||||||| ||||||||  |||||| | ||||||||||||||||||||||||||||| ||||||||||   ||||||| ||| ||||| ||||||    
T  5632792 caaggtagaatctttttcactcctaaacccactcattctgaacctctactgacttgagcgtcagagtgtctaccggtacacacaccctattcggtccaac 5632891  T
Q  499 gctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||||||||||| | |||||||||||||||||||    
T  5632892 gctcactgaagttctctcaccaccgtgaaccacc 5632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 20093530 - 20093475
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaac 498  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  20093530 ctctactgacttgagcgtcggagtgtctacaggtacacacccccatccgtttcaac 20093475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 19973574 - 19973604
Alignment:
Q  2 ctgtcatcaatcaaataagagtttacatgtt 32  Q
    |||||||||||||||||||||||||||||||    
T  19973574 ctgtcatcaatcaaataagagtttacatgtt 19973604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 504
Target Start/End: Complemental strand, 1855714 - 1855608
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacct----ctactgacttgagcgtcggagtgtctacatatacac-acccccattcgttcc 495  Q
    |||||||||||| |||||||||| |||  ||||||| |||||||     |||| |||||||||| ||||||||| ||  |||||  |||||||||| |||    
T  1855714 caaggtagaatccctttcactctaaaa--ccccattatgaacctttacttacttacttgagcgttggagtgtctgcaggtacactccccccattcgatcc 1855617  T
Q  496 aacgctcac 504  Q
    |||||||||    
T  1855616 aacgctcac 1855608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 19928548 - 19928492
Alignment:
Q  68 attcactgttagcccatgcaaatgaagaataacaagggtcctgcaactgaaaatgct 124  Q
    ||||||| | ||||| | ||||||||||  |||||||||||| ||||||||||||||    
T  19928548 attcactttaagccctttcaaatgaagagaaacaagggtcctacaactgaaaatgct 19928492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 401 - 504
Target Start/End: Original strand, 13770756 - 13770861
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc--cattcgttccaac 498  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||| ||||  |||||| ||||||    
T  13770756 caaggtagaatctctttcattctcaaaccccccattctaaacctctactgacttgagcgtcggagtgtctgcaagtacacgccccttcattcggtccaac 13770855  T
Q  499 gctcac 504  Q
    ||||||    
T  13770856 gctcac 13770861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 407 - 532
Target Start/End: Original strand, 22282271 - 22282397
Alignment:
Q  407 agaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacc-cccattcgttccaacgctcact 505  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||  |||||||| |||||||| | |||||||||||    
T  22282271 agaatatctatcactctcaaatccctcattctgaacctctactgacttgagcgtcagagtgtctgcaggtacacaccacccattcggttcaacgctcact 22282370  T
Q  506 gaagtaccctcaccaccgtgaaccacc 532  Q
    ||||||  |||||| || |||||||||    
T  22282371 gaagtattctcacctccatgaaccacc 22282397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 401 - 503
Target Start/End: Original strand, 31247604 - 31247704
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgc 500  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||| ||| ||| |||||    
T  31247604 caaggtagaatctctttcact-tctaatcccccattctgaacctctactgacttgagtgtcagagtgtctacaggtacacaccccc-ttcattcaaacgc 31247701  T
Q  501 tca 503  Q
    |||    
T  31247702 tca 31247704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 24942324 - 24942225
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgc 500  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||   | || ||||||||| ||  ||||| ||||| || ||||||||||    
T  24942324 caaggtagaatctctttcactctcaaac-ccccattctaaacctctactgact--cgggttggagtgtctgcaggtacacccccccttttgttccaacgc 24942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 486
Target Start/End: Original strand, 9555033 - 9555116
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacaccccc 486  Q
    |||||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||  |||||||||||    
T  9555033 caaggttgaatctctcacactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtatgcaggtacacaccccc 9555116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 33273708 - 33273758
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtctacatatacacacccccattcg 491  Q
    ||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  33273708 acctctacttacttgagcgtcggagtgtctgcaggtacacacccccattcg 33273758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 1039142 - 1039208
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 468  Q
    ||||||||||||||||||||| || ||  ||||||| |  ||||||||||||||||||||| ||||||    
T  1039142 caaggtagaatctctttcact-tctaaaaccccatttttgacctctactgacttgagcgtcagagtgt 1039208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 21687219 - 21687118
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacg 499  Q
    |||||||||||||||  ||||||||||| ||||||||||||  |||||| | |||||||||| | || || ||  |||||||||| |||||| |||||||    
T  21687219 caaggtagaatctctcacactctcaaac-ccccattctgaa-atctactaatttgagcgtcgaattgcctgcaggtacacacccctcattcggtccaacg 21687122  T
Q  500 ctca 503  Q
    ||||    
T  21687121 ctca 21687118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 21691543 - 21691442
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacg 499  Q
    |||||||||||||||  ||||||||||| ||||||||||||  |||||| | |||||||||| | || || ||  |||||||||| |||||| |||||||    
T  21691543 caaggtagaatctctcacactctcaaac-ccccattctgaa-atctactaatttgagcgtcgaattgcctgcaggtacacacccctcattcggtccaacg 21691446  T
Q  500 ctca 503  Q
    ||||    
T  21691445 ctca 21691442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Original strand, 22906399 - 22906441
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacacccc 485  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  22906399 ctctactgacttgagcgtcggagtgtcttcaggtacacacccc 22906441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 532
Target Start/End: Complemental strand, 19026448 - 19026314
Alignment:
Q  399 ttcaaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaa 497  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||| ||||||||||  ||  ||||||| ||||||||| |||||    
T  19026448 ttcaaggtagaatctctttcactctcaaactcctcattctggacctctacttacttgagcatcggagtgtccgcaggtacacaccccccattcggtccaa 19026349  T
Q  498 cgctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    ||||||| | | |||  ||||||||||||||||||    
T  19026348 cgctcaccgtactactttcaccaccgtgaaccacc 19026314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 15327922 - 15327991
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15327922 caaggtagaatcttcttcactctgaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 15327991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 5356539 - 5356473
Alignment:
Q  403 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    ||||||||||||||||||| || || |||||||| |  ||||||||||||| ||||||||||||||||    
T  5356539 aggtagaatctctttcact-tctaaacccccatttttgacctctactgactggagcgtcggagtgtct 5356473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 42534326 - 42534380
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaa 497  Q
    ||||||| |||||||||||||||||||||||  | ||||||||||| || |||||    
T  42534326 ctctacttacttgagcgtcggagtgtctacaggtgcacacccccatccgctccaa 42534380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 10887034 - 10887075
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtctacatatacacac 482  Q
    |||||||||||||||||| ||||||||||| ||| |||||||    
T  10887034 acctctactgacttgagcatcggagtgtctgcatgtacacac 10887075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 23150715 - 23150666
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtctacatatacacacccccattc 490  Q
    ||||||| |||||||||||||||||||||| ||  ||||| |||||||||    
T  23150715 acctctaatgacttgagcgtcggagtgtctgcaggtacacccccccattc 23150666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 31066479 - 31066545
Alignment:
Q  404 ggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31066479 ggtagaatctctttcactctcaaacccctcattctgaacctctactgacttgagcgtcggagtgtct 31066545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 532
Target Start/End: Complemental strand, 16869977 - 16869878
Alignment:
Q  432 ccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgctcactgaagtaccctcaccaccgtgaaccac 531  Q
    ||||| ||||||||||||| ||||||| ||||||||||| ||  ||||| ||| |||||| |||||||||||||||||||| ||||||||| ||||||||    
T  16869977 ccattatgaacctctactggcttgagcatcggagtgtctgcaggtacac-ccctcattcggtccaacgctcactgaagtactctcaccaccatgaaccac 16869879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 41438681 - 41438615
Alignment:
Q  403 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  41438681 aggtagaatctctctcactctcaaaccccc-attctgaacctctactgacttaagcgtcggagtgtct 41438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 23933836 - 23933957
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacaccc-ccattcgttccaacg 499  Q
    ||||||||||||| ||||| |||||||||||  ||| |||||||||| ||||||||||| |||||||||| ||  ||||||||| ||||||| | ||| |    
T  23933836 caaggtagaatctttttcattctcaaacccct-attttgaacctctattgacttgagcgacggagtgtctgcaggtacacaccctccattcggttcaatg 23933934  T
Q  500 ctcactgaagtaccctcaccacc 522  Q
    |||||||||||||  ||||||||    
T  23933935 ctcactgaagtacattcaccacc 23933957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 16517462 - 16517330
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacaca-cccccattcgttccaacg 499  Q
    ||||||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||| || |||||||| || |||| |||||||||  |||||||    
T  16517462 caaggtagaatctctcttactctaaaaccccc-attctgaac-tctactgacttgagcgtcagaatgtctacagatgcacaccccccattcagtccaacg 16517365  T
Q  500 ctca-ctgaagtaccctc-accaccgtgaaccacc 532  Q
    |||| | ||||||| | | ||||||||||||||||    
T  16517364 ctcaccggaagtacacactaccaccgtgaaccacc 16517330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 24106967 - 24107034
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtc 469  Q
    ||||||||||| ||||||||| || || ||||||||||  |||||||||||||||||||||||||||||    
T  24106967 caaggtagaatttctttcact-tctaaacccccattcttgacctctactgacttgagcgtcggagtgtc 24107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 14746840 - 14746897
Alignment:
Q  399 ttcaaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgag 457  Q
    ||||||||||||||||||||||| || || |||| ||| |||| |||||||||||||||    
T  14746840 ttcaaggtagaatctctttcact-tctaaacccctattatgaaactctactgacttgag 14746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 18732373 - 18732304
Alignment:
Q  429 cccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaac 498  Q
    |||||||||||||| ||||||||||||||| ||| ||||||| ||  ||||||| ||||||||| ||||||    
T  18732373 cccccattctgaac-tctactgacttgagcatcgtagtgtctgcaggtacacactccccattcgatccaac 18732304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Complemental strand, 27282103 - 27282074
Alignment:
Q  441 acctctactgacttgagcgtcggagtgtct 470  Q
    ||||||||||||||||||||||||||||||    
T  27282103 acctctactgacttgagcgtcggagtgtct 27282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 52193395 - 52193455
Alignment:
Q  443 ctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgctcac 504  Q
    ||||||||||||||||||| |||||||| ||  |||||| || |||||| ||||||||||||    
T  52193395 ctctactgacttgagcgtcagagtgtctgcaagtacaca-cctcattcggtccaacgctcac 52193455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 532
Target Start/End: Original strand, 15204008 - 15204140
Alignment:
Q  401 caaggtagaatctctttcac-tctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacg 499  Q
    |||||||||||||||||  | ||  ||||||| ||||||||||||||||| ||||||||||| |||||||| ||  |||||||||||||||| |||||||    
T  15204008 caaggtagaatctcttttccatccaaaacccctcattctgaacctctacttacttgagcgtcagagtgtctgcagctacacacccccattcggtccaacg 15204107  T
Q  500 ctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||| || | |||  ||||||||||||||||||    
T  15204108 ctcattggaatactatcaccaccgtgaaccacc 15204140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 532
Target Start/End: Original strand, 15243029 - 15243161
Alignment:
Q  401 caaggtagaatctctttcac-tctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacg 499  Q
    |||||||||||||||||  | ||  ||||||| |||| |||||||||||| |||||||||||||||||||| ||  |||||||||||||||| |||||||    
T  15243029 caaggtagaatctcttttccatccaaaacccctcattatgaacctctacttacttgagcgtcggagtgtctgcaggtacacacccccattcggtccaacg 15243128  T
Q  500 ctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    ||||| | | |||  ||||||||||||||||||    
T  15243129 ctcaccggaatactatcaccaccgtgaaccacc 15243161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 530
Target Start/End: Original strand, 23088951 - 23089081
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacaca-cccccattcgttccaacg 499  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||| | ||| ||||||  ||| ||||| |||||||    
T  23088951 caaggtagaatctctttcactctcaaaccccatattctaaacctctactgacttgagcatcggagtgtttgcatgtacacataccctattcggtccaacg 23089050  T
Q  500 ctcactgaagtaccctcaccaccgtgaacca 530  Q
    ||||| | |  ||  ||||||||||||||||    
T  23089051 ctcaccggaacactttcaccaccgtgaacca 23089081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 9860812 - 9860883
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctaca 473  Q
    ||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  9860812 caaggtataatctctttcact-tcaaaaccctcattctgaacctctactgacttgagcgtcggagtgtctaca 9860883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 504
Target Start/End: Original strand, 16841272 - 16841374
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacc-cccattcgttccaacg 499  Q
    ||||||||||||||   ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  |  |||||||| |||||||| |||||||    
T  16841272 caaggtagaatctcacacactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtctgtaggtacacacctcccattcggtccaacg 16841369  T
Q  500 ctcac 504  Q
    |||||    
T  16841370 ctcac 16841374  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 3750303 - 3750371
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 470  Q
    ||||||||||||||||||||| || || ||||||||||  |||||||||||||||||||||| |||||||    
T  3750303 caaggtagaatctctttcact-tctaaacccccattcttgacctctactgacttgagcgtcgaagtgtct 3750371  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 504
Target Start/End: Original strand, 36602649 - 36602753
Alignment:
Q  401 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacaca-cccccattcgttccaac 498  Q
    |||| |||||||||||| | |||| |||||| | |||||||||||||||| |||||||||||| ||||||| ||  |||||| |||||||||| ||||||    
T  36602649 caagatagaatctcttttccctctaaaaccctc-attctgaacctctacttacttgagcgtcgcagtgtctgcaggtacacaccccccattcggtccaac 36602747  T
Q  499 gctcac 504  Q
    ||||||    
T  36602748 gctcac 36602753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 3024641 - 3024557
Alignment:
Q  401 caaggtagaatctctttcactctcaaac-cccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacaccc 484  Q
    |||||||||||||  |||||||| |||| |||||||| ||||||||||||||||||||| || | |||||| ||| |||||||||    
T  3024641 caaggtagaatcttcttcactcttaaactcccccattttgaacctctactgacttgagcatcagggtgtctgcatgtacacaccc 3024557  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 506
Target Start/End: Original strand, 12901417 - 12901511
Alignment:
Q  415 tttcactctcaaacccccc--attctgaacctctactgacttgagcgtcggagtgtctacatatacacac-ccccattcgttccaacgctcactg 506  Q
    ||||||||| |||||||||  ||||  |||||||||| |||||||||||||||||||| ||  ||||||| ||||||||| ||||||||| ||||    
T  12901417 tttcactctaaaacccccctcattcataacctctacttacttgagcgtcggagtgtctgcaggtacacacaccccattcggtccaacgcttactg 12901511  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 1694296 - 1694352
Alignment:
Q  476 tacacacccccattcgttccaacgctcactgaagtaccctcaccaccgtgaaccacc 532  Q
    |||||||||||||||| ||||||||||||||| |||  ||||||||| ||| |||||    
T  1694296 tacacacccccattcggtccaacgctcactgacgtattctcaccaccatgacccacc 1694352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 509
Target Start/End: Original strand, 10848340 - 10848442
Alignment:
Q  404 ggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgctca 503  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||||||||| |||||| |||||| | ||  ||||| |||  ||||| |||||||||||    
T  10848340 ggtagaatctctcacactctcaaa-cccccattctgaa-ttctactgacttaagcgtcagagtgtatgcaggtacac-cccatattcggtccaacgctca 10848436  T
Q  504 ctgaag 509  Q
    | ||||    
T  10848437 ccgaag 10848442  T

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Target: scaffold0023 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 402 - 530
Target Start/End: Complemental strand, 87431 - 87302
Alignment:
Q  402 aaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc-cattcgttccaacgc 500  Q
    ||||||||||||  |||||||| ||||||| |||| |||||||||||| |||||||||||||||||| | ||  |||||||||| |||||| ||||  ||    
T  87431 aaggtagaatcttcttcactctaaaaccccacattatgaacctctactaacttgagcgtcggagtgtttgcaggtacacacccctcattcggtccagtgc 87332  T
Q  501 tcactgaagtaccctcaccaccgtgaacca 530  Q
    ||| |||||| | ||||||||| |||||||    
T  87331 tcattgaagttctctcaccaccatgaacca 87302  T

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Target: scaffold0043 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 56758 - 56840
Alignment:
Q  403 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccc 485  Q
    |||||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  56758 aggtagaatcttcttcactcttaaaccccccattttgaacctctactgacttgagcgtcgaagtgtctgcaggtacacacccc 56840  T

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Target: scaffold0213 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 24315 - 24390
Alignment:
Q  429 cccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacacccccattcgttccaacgctcac 504  Q
    |||||||||||||||||||| |||||||| ||| |||| ||| ||  ||||| |||||||||| ||||||||||||    
T  24315 cccccattctgaacctctacagacttgagtgtcagagtatctgcaggtacacccccccattcggtccaacgctcac 24390  T

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Target: scaffold1401 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1401
Description:

Target: scaffold1401; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 867 - 802
Alignment:
Q  401 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 468  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||||||||||||||||| ||||||    
T  867 caaggtagaatctctcacactctcaaaccctc-attctgaac-tctactgacttgagcgtcagagtgt 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Original strand, 10696 - 10732
Alignment:
Q  446 tactgacttgagcgtcggagtgtctacatatacacac 482  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10696 tactgacttgagcgtcggagtgtctacaggtacacac 10732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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