View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6161_high_24 (Length: 246)
Name: NF6161_high_24
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_high_24 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33644813 - 33644584
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33644813 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttgatccaacttggt |
33644714 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644713 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
33644614 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33644613 |
tcctgcaacgttccctctcacccaattttg |
33644584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33304219 - 33304448
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
33304219 |
acatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaattggt |
33304318 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||| ||||||| | || |||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
33304319 |
atttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgc |
33304418 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
33304419 |
tactgcaacgttccctctcacccaattttg |
33304448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33262361 - 33262590
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |||||||||||||||| || ||||| | ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
33262361 |
acatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaacttggt |
33262460 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
|||||| |||||||| | ||||||||| | ||| || || || |||||||||||| ||| ||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
33262461 |
atttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtcatgc |
33262560 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
33262561 |
tactgcaacgttccctctcacccaattttg |
33262590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33387889 - 33388118
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
33387889 |
acatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaactcggt |
33387988 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||| || ||||||| |||| ||||||| |||| ||||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
33387989 |
atttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatgaaaatgtcatgc |
33388088 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
| ||||||| ||||| ||||||| ||||| |
|
|
| T |
33388089 |
tactgcaacactccctatcacccagttttg |
33388118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28870442 - 28870221
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||| |
|
|
| T |
28870442 |
acatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaacttggt |
28870343 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
||||||||||||||||| ||||| | | | ||| || ||| ||||||||||| ||| |||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28870342 |
atttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgccatgc |
28870243 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacc |
222 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
28870242 |
tacaacaacgttccctctcacc |
28870221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33285329 - 33285561
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| || ||||| || |||||||||||| |
|
|
| T |
33285329 |
acatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatccaacttggt |
33285428 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatca---aagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtca |
197 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||| ||| ||| | | ||||| | ||| ||| |||||| ||||||||||||||||||||||||| || |
|
|
| T |
33285429 |
atttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgcca |
33285528 |
T |
|
| Q |
198 |
tgctcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| |
|
|
| T |
33285529 |
tgctactgcaacgttccctttcacctaattttg |
33285561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9166496 - 9166713
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| || |||| || |||||||||||||||||||| |
|
|
| T |
9166496 |
acatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttgatccaacttggt |
9166595 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||||||| || |||| || ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9166596 |
atttcaattcctggcgtaacaatttgaatcctatcaaa---------gtgggatggtgggtttgcctgaataaattgcatcatccatgaaaatgtcatgc |
9166686 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaatt |
227 |
Q |
| |
|
| |||||| ||||| | |||| ||||| |
|
|
| T |
9166687 |
tactgcaatgttccttatcactcaatt |
9166713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 33398828 - 33399018
Alignment:
| Q |
22 |
attgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtatttcacttcctggagttaca |
121 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
33398828 |
attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca |
33398927 |
T |
|
| Q |
122 |
atttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcac |
221 |
Q |
| |
|
||||||| |||| ||||||| | || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33398928 |
atttgag------------aggt------ggattgtggattggccagaatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcac |
33399009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 33409716 - 33409936
Alignment:
| Q |
4 |
tacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtatt |
103 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||||||| || ||| ||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
33409716 |
tacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaacttggtatt |
33409815 |
T |
|
| Q |
104 |
tcacttcctggagttacaatttg-agtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctc |
202 |
Q |
| |
|
||||||||||||||||||||||| || | ||| | |||||| |||| |||||||||||||||| ||| ||||||||||| ||| ||||| |
|
|
| T |
33409816 |
tcacttcctggagttacaatttgaagcgccgacaa--tttgttggg-----ttgttggtttgcctgaatgaaatgtgccatccatgaaattgtgatgcta |
33409908 |
T |
|
| Q |
203 |
ctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
33409909 |
ctgcaacgttccctctcaaccaattttg |
33409936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33057313 - 33057530
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
33057313 |
acatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttgatccaacttggt |
33057412 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
||||||||||||||| | || |||||| ||| || || |||| || ||||||||| |||||||||| |||||||| ||| |||||||| |
|
|
| T |
33057413 |
atttcacttcctggattaactatttga-----atctcagaag-------aggaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgc |
33057500 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
33057501 |
tcctgcaatgttccctctcacccaattttg |
33057530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31563097 - 31562877
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||| || ||||||||||||||| | ||| |
|
|
| T |
31563097 |
acatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaattcggt |
31562998 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
||||||||||||||| ||||| ||| | ||| || |||| |||||||| ||| | | ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
31562997 |
atttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcatgc |
31562898 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcac |
221 |
Q |
| |
|
|||||||| | |||||||||| |
|
|
| T |
31562897 |
tcctgcaatgctccctctcac |
31562877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 221
Target Start/End: Original strand, 33271582 - 33271741
Alignment:
| Q |
53 |
tctatttgtattgaatcacccacactttgattgttgatccaacttggtatttcacttcctggagttacaatttgagtc-ctatcaaagtaggttgggtag |
151 |
Q |
| |
|
|||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||| || |
|
|
| T |
33271582 |
tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaa----------taa |
33271671 |
T |
|
| Q |
152 |
gattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcac |
221 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
33271672 |
gattgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcac |
33271741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 33358714 - 33358849
Alignment:
| Q |
88 |
gatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcc----tgaatgaattgtatcat |
183 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || |||||| | |||| ||| ||| ||||||||| || |||||||| |||||||||||| |||| |
|
|
| T |
33358714 |
gatccaacttagcatttcacttcctggagtaactatttgaatgctatgaaaatagtcagggtaggatggtgggtttgccagaatgaatgaattgtttcat |
33358813 |
T |
|
| Q |
184 |
ccatgaaaatgtcatgctcctgcaacgttccctctc |
219 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
33358814 |
ccatgaaagtgtcatgctactgcaacgttccctctc |
33358849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33358668 - 33358716
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagat |
49 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33358668 |
acatacaaaaccaatgacattattgttattgtcatgcctaataggagat |
33358716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 381 - 608
Alignment:
| Q |
3 |
atacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtat |
102 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||| |||||| || |||||||||||||| |||||||| |
|
|
| T |
381 |
atacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtat |
480 |
T |
|
| Q |
103 |
ttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctc |
202 |
Q |
| |
|
||||||||||||||| ||||||||| | || || || | |||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
481 |
ttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgcta |
580 |
T |
|
| Q |
203 |
ctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
581 |
ctacaacattccctctcacccaattttg |
608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 6127 - 6354
Alignment:
| Q |
3 |
atacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtat |
102 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||| |||||| || |||||||||||||| |||||||| |
|
|
| T |
6127 |
atacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtat |
6226 |
T |
|
| Q |
103 |
ttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctc |
202 |
Q |
| |
|
||||||||||||||| ||||||||| | || || || | |||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
6227 |
ttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgcta |
6326 |
T |
|
| Q |
203 |
ctgcaacgttccctctcacccaattttg |
230 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
6327 |
ctacaacattccctctcacccaattttg |
6354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31479281 - 31479054
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||| | |||| |||||||||||||||||| |||||||| ||||| |||||| ||||| ||| |||| || |||||||||| ||||||||| |
|
|
| T |
31479281 |
acatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttgaaccaacttggc |
31479182 |
T |
|
| Q |
101 |
atttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||| || || || || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31479181 |
atttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccatgaaaatgtcatgc |
31479082 |
T |
|
| Q |
201 |
tcctgcaacgttccctctcacccaattt |
228 |
Q |
| |
|
| || ||||||||| | ||||||||||| |
|
|
| T |
31479081 |
tactccaacgttccgtttcacccaattt |
31479054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 31472813 - 31472596
Alignment:
| Q |
11 |
ccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtatttcacttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||| | |||| ||||||||| | |||||||||| |||||||||||||||||||| |
|
|
| T |
31472813 |
ccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttgaaccaacttggtatttcacttc |
31472714 |
T |
|
| Q |
111 |
ctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaac- |
209 |
Q |
| |
|
||||||| ||||| ||| | ||||| | || ||| |||||||| | ||||||||||||| ||||||||||||||||||||||||| | |||||| |
|
|
| T |
31472713 |
ctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaaca |
31472614 |
T |
|
| Q |
210 |
--gttccctctcacccaa |
225 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31472613 |
atgttccctctcacccaa |
31472596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 31499328 - 31499206
Alignment:
| Q |
1 |
acatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||| || ||||| || | |||||||| | |
|
|
| T |
31499328 |
acatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaaaccaacttgat |
31499229 |
T |
|
| Q |
101 |
atttcacttcctggagttacaat |
123 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
31499228 |
atttcacttcctggagtaacaat |
31499206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 31148111 - 31148250
Alignment:
| Q |
80 |
tgattgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgta |
179 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||||||||| || |||| | || |||||||| |||| ||| |||||| ||||| |
|
|
| T |
31148111 |
tgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatcaga------tg---aggattgtgggttcgcccgaatgagttgta |
31148201 |
T |
|
| Q |
180 |
tcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattt |
228 |
Q |
| |
|
|||||||||||||| ||||||| | |||| |||||||||||||||||| |
|
|
| T |
31148202 |
tcatccatgaaaatatcatgctattccaacattccctctcacccaattt |
31148250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 31504384 - 31504239
Alignment:
| Q |
82 |
attgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggt-aggattgtaggtttgcctgaatgaattgtat |
180 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||| || ||| || || || ||||||| | || | |||||||| ||||||||| |||||||||||| |
|
|
| T |
31504384 |
attgttgaaccaacttggtatttcatttccaggagtaacgatt-gaatcacatgaaagtag-tcggatgaggattgtgggtttgccttaatgaattgtat |
31504287 |
T |
|
| Q |
181 |
catccatgaaaatgtcatgctcctgcaacgttccctctcacccaattt |
228 |
Q |
| |
|
|||||||||||||||||| || || | | |||||||||| ||||||| |
|
|
| T |
31504286 |
catccatgaaaatgtcattctaatgtagcattccctctcatccaattt |
31504239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 31157122 - 31157188
Alignment:
| Q |
162 |
ttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattt |
228 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| ||||| ||| |||||||||||||| |
|
|
| T |
31157122 |
ttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaattt |
31157188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 31157018 - 31157082
Alignment:
| Q |
61 |
tattgaatcacccacactttgattgttgatccaacttggtatttcacttcctggagttacaattt |
125 |
Q |
| |
|
||||||||||||| | || |||||||||| |||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
31157018 |
tattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaattt |
31157082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 31484966 - 31484918
Alignment:
| Q |
77 |
ctttgattgttgatccaacttggtatttcacttcctggagttacaattt |
125 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||| | ||||||| |
|
|
| T |
31484966 |
ctttgattgttgaaccagcttggtatttcactgcctggaataacaattt |
31484918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 17441116 - 17440924
Alignment:
| Q |
26 |
ttattgtcatgcataataggagattcgtctatttgtattgaatcacccacactttgattgttgatccaacttggtatttcacttcctggagttacaattt |
125 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| ||||||||||||||| || | |||||||||||||||||||||||| ||||||||| | ||||| | |
|
|
| T |
17441116 |
ttattgtcatgcttaataggagattggtctattcttattgaatcacccacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatat |
17441017 |
T |
|
| Q |
126 |
gagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaa |
225 |
Q |
| |
|
|| |||||| || ||| | ||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
17441016 |
gaatcctattcaaatagaaag------------ggtttgccttaatgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaa |
17440929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University