View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_high_30 (Length: 214)
Name: NF6161_high_30
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 55299358 - 55299542
Alignment:
| Q |
19 |
gtattgagctcaaacagcttagccaaactgggctgtacaagtaaagaacaggggaatccacttcttgtcttgttagtaaagctggactgaacctaggtag |
118 |
Q |
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| T |
55299358 |
gtattgagctcaaacagcttagccaaactgggctgtacaagtaaagaacaggggaatccacttcttgtcttgttagtaaagctggactgaacctaggtag |
55299457 |
T |
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| Q |
119 |
ccttatttttgtgccaagttttgtatccgacagatagagcaaaaataatcgtgttttctcggcttgagctgcttctgtgatgatg |
203 |
Q |
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| T |
55299458 |
ccttatttttgtgccaagttttgtatctgacagatagagcaaaaatattcgtgttttctcggcttgagctgcttctgtaatgatg |
55299542 |
T |
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