View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6161_high_7 (Length: 373)
Name: NF6161_high_7
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 4206876 - 4207227
Alignment:
| Q |
1 |
ctaatgaaaacttagagaaaaattatgtttaaatatcttggtttatctattggtgggaacccaagcaaattggtattttgtgaacttttgattgaggatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4206876 |
ctaatgaaaacttagagaaaaattatgtttaaatatcttggtttgtctattggtgggaacccaagaaaattggtattttttgaacttttgatt-aggatc |
4206974 |
T |
|
| Q |
101 |
tgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4206975 |
tgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaat |
4207074 |
T |
|
| Q |
201 |
gatcatttaagagagaagctaaattaattaaacaatacaagtgaaagtaatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4207075 |
gatcatttaagagagaagctaaattaattaaataatacaagtgaaagcaatgtaatttcgtg-aatagtcgtgatgtactgttgcgcgatattaagcatt |
4207173 |
T |
|
| Q |
301 |
tttgaattgtagtggatggtttgggatttaaacttccttattgtatttgttgtt |
354 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||| | |||||||||||| |
|
|
| T |
4207174 |
tttgaattgtagtggacggtttgggatttgaatttccttctcgtatttgttgtt |
4207227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 33418131 - 33417972
Alignment:
| Q |
142 |
agttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaag |
241 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
33418131 |
agttgaagtggtcgtggtctcatggaattaagctgagagttaactttggataccaaactcatcatctaagaaagaaattaaattaattaaacaatacaag |
33418032 |
T |
|
| Q |
242 |
tgaaagtaatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcattt |
301 |
Q |
| |
|
| ||| |||||||||||||||||||||||| |||||| || || ||||||||||||| |
|
|
| T |
33418031 |
tcgaagcaatgtaattttgtgaaatagtcgtgatgtacaattttgcaatattaagcattt |
33417972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 38881454 - 38881352
Alignment:
| Q |
140 |
tgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaataca |
239 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38881454 |
tgagttaaagtggtcgtggtcacatggaattaagctaagagttaactttagataccaaactcatcatttaagagagaaactaaattaattaagcaataca |
38881355 |
T |
|
| Q |
240 |
agt |
242 |
Q |
| |
|
||| |
|
|
| T |
38881354 |
agt |
38881352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University