View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_1 (Length: 820)
Name: NF6161_low_1
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 485 - 801
Target Start/End: Original strand, 5017200 - 5017516
Alignment:
| Q |
485 |
ttacatttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
584 |
Q |
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| T |
5017200 |
ttacagttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
5017299 |
T |
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| Q |
585 |
acagcaacagtagtagtaattcttcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcagtggccttgttttcctcagactgccac |
684 |
Q |
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| T |
5017300 |
acagcaacagtagtagtaattattcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccac |
5017399 |
T |
|
| Q |
685 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggctcaggtatttcagccgactcagctgttcggagcaaccatccctcccatttttcag |
784 |
Q |
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| T |
5017400 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggcgcaggtatttcagccgactcagctgttcggagcaaacatccctcccatttttcag |
5017499 |
T |
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| Q |
785 |
acattcaatggtaatgg |
801 |
Q |
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| T |
5017500 |
acattcaatggtaatgg |
5017516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 5016322 - 5016609
Alignment:
| Q |
13 |
cagagacaaaatctaaaacaacactttgagtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaac |
112 |
Q |
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| T |
5016322 |
cagagacaaaatctaaaacaacactt-gagtatccaaccaagtagtcacaccaaatccatttcctactttcatatgtgccgtttggactttggtcaaaac |
5016420 |
T |
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| Q |
113 |
ccttaatgcttgaattcacagtttgccaccaattggctatacttcactctaggttataattgtaacactcgtaccttatatgaatatccctcactatgga |
212 |
Q |
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| T |
5016421 |
cctta-tgcttgaattcacagtttgccaccaattggctatacttcactctaggttatagttgtaacactcgtaccttatacgaatatccctcactatgga |
5016519 |
T |
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| Q |
213 |
aatcaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaatcttctatttctt |
302 |
Q |
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| T |
5016520 |
aaccaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaattttctatttctt |
5016609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 343 - 489
Target Start/End: Original strand, 5016606 - 5016750
Alignment:
| Q |
343 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttattaaaaataacttt |
442 |
Q |
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| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttatt-aaaataacttt |
5016703 |
T |
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| Q |
443 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
489 |
Q |
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| T |
5016704 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
5016750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 5005292 - 5005339
Alignment:
| Q |
515 |
ttttcattttattaagatgaatatgattaacagaacaagcaagacaaa |
562 |
Q |
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| T |
5005292 |
ttttcatttgattaagatgaatatgattagcagaacacgcaggacaaa |
5005339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 801
Target Start/End: Original strand, 5005553 - 5005596
Alignment:
| Q |
758 |
ggagcaaccatccctcccatttttcagacattcaatggtaatgg |
801 |
Q |
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| T |
5005553 |
ggagcaaatatccctcccatttttcagacattcaatgttaatgg |
5005596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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