View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_12 (Length: 349)
Name: NF6161_low_12
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 36 - 349
Target Start/End: Original strand, 45512592 - 45512905
Alignment:
| Q |
36 |
atttggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaa |
135 |
Q |
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| T |
45512592 |
atttggacgattacatgccttgttcaccaatagttgctccaaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctggaaa |
45512691 |
T |
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| Q |
136 |
taatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaac |
235 |
Q |
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| T |
45512692 |
taatttcagtgggagtccaattcctatgttcttgggttccatgggacgccttgagtatctctctctgtctcatgctcgtcttagcgggaggattcccaac |
45512791 |
T |
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| Q |
236 |
agtctcagaaatctcaagaacctacaattccttgatctcagcttcaattactattacattacgcaatatgaagagagagaattacaaatgcatgacgaca |
335 |
Q |
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| T |
45512792 |
agtctcagaaatctcaagaacctacgattccttgatctcagcttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacggca |
45512891 |
T |
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| Q |
336 |
ccagttggatttca |
349 |
Q |
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| T |
45512892 |
ccagttggatttca |
45512905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 22848928 - 22848797
Alignment:
| Q |
75 |
caaatgtgagctcatctttgttgcaattggaacacttgacttatttggacttgtctagaaataatttcagtgggagtccaattcctatgttcttgggttc |
174 |
Q |
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| T |
22848928 |
caaatctgagctcatctttgttgcacttggaatacttgacttatttggacttgactggaaatgatttcaatttgagtccaattcctatgttcgtaggttc |
22848829 |
T |
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| Q |
175 |
catgggacgccttgagtatctctctctgtctc |
206 |
Q |
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| T |
22848828 |
catgggacgtcttgagtatctctctctctctc |
22848797 |
T |
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