View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_16 (Length: 306)
Name: NF6161_low_16
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 39711514 - 39711224
Alignment:
| Q |
8 |
cagaaggtgaaggagcattcactggaggagaatttgttggggagtgtaccggtgcagcctcagaaggtgaaggagcattccaggtcggtgattgtgatgg |
107 |
Q |
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| T |
39711514 |
cagaaggtgaaggagcattcactggaggagaatttgttggggagtgtaccggtgcagcctcagaaggtgaaggagcattccaggtcggtgattgtgatgg |
39711415 |
T |
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| Q |
108 |
ggagcgtaccggtgcaatttcagaaggtgaaggagcattccatgacggagactgcgctggagccgtccaaccagcaaaacttggtgaaggagcattccaa |
207 |
Q |
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| T |
39711414 |
ggagcgtaccggtgcagtttcagaaggtgaaggagcattccatgacggagactgcgctggagccgtccaaccagcaaaacttggtgaaggagcattccaa |
39711315 |
T |
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| Q |
208 |
gccggtggttgtgctggggagtaagttggagagttccatgagggagacggtgctggggagtataccggtgcaaccatcagagatgatgatg |
298 |
Q |
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| T |
39711314 |
gccggtggttgtgctggggagtaagttggagagttccatgagggagacggtgctggggagtataccggtgcaaccatcggagatgatgatg |
39711224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 39711548 - 39711433
Alignment:
| Q |
34 |
ggagaatttgttggggagtgtaccggtgcagcctcagaaggtgaaggagcattccaggtcggtgattgtgatggggagcgtaccggtgcaatttcagaag |
133 |
Q |
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| T |
39711548 |
ggagaattttttgcgaattgtaccggtgcgacctcagaaggtgaaggagcattcactggaggagaatttgttggggagtgtaccggtgcagcctcagaag |
39711449 |
T |
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| Q |
134 |
gtgaaggagcattcca |
149 |
Q |
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| T |
39711448 |
gtgaaggagcattcca |
39711433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 39704763 - 39704667
Alignment:
| Q |
186 |
acttggtgaaggagcattccaagccggtggttgtgctggggagtaagttggagagttccatgagggagacggtgctggggagtataccggtgcaacc |
282 |
Q |
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| T |
39704763 |
acttggtgagggagcatttcgagccgatggttgtgttggggagcgtgcaggagaattccatgagggagacaatgatggggagtgcaccggtgcaacc |
39704667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 39704883 - 39704835
Alignment:
| Q |
180 |
agcaaaacttggtgaaggagcattccaagccggtggttgtgctggggag |
228 |
Q |
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| T |
39704883 |
agcaacacttgatgagggagcattccaagccggtggttgtgttggggag |
39704835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 39704991 - 39704949
Alignment:
| Q |
186 |
acttggtgaaggagcattccaagccggtggttgtgctggggag |
228 |
Q |
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| T |
39704991 |
acttggtgagggagcattccaagctggtggttgtgttggggag |
39704949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 39690512 - 39690560
Alignment:
| Q |
234 |
tggagagttccatgagggagacggtgctggggagtataccggtgcaacc |
282 |
Q |
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| T |
39690512 |
tggagaattccatgagggagacgatgatggggagtgcaccggtgcaacc |
39690560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 39704940 - 39704892
Alignment:
| Q |
180 |
agcaaaacttggtgaaggagcattccaagccggtggttgtgctggggag |
228 |
Q |
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||||| ||||| ||| |||||||||||||| |||||||||| ||||||| |
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| T |
39704940 |
agcaacacttgatgagggagcattccaagctggtggttgtgttggggag |
39704892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 14229481 - 14229518
Alignment:
| Q |
192 |
tgaaggagcattccaagccggtggttgtgctggggagt |
229 |
Q |
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| T |
14229481 |
tgaaggagcattccaagctggtggttgtgcttgggagt |
14229518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 38711160 - 38711212
Alignment:
| Q |
186 |
acttggtgaaggagcattccaagccggtggttgtgctggggagtaagttggag |
238 |
Q |
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| T |
38711160 |
acttggtgaaggagccttccaagcaggtgattgtgatggggagtgtgttggag |
38711212 |
T |
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