View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6161_low_18 (Length: 288)
Name: NF6161_low_18
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 26755218 - 26755482
Alignment:
| Q |
16 |
caaatagaagcatacaaactgactacctgtccaacgacacagatcatgagtatgaccaatcttatttggaagaggaaaaatttcagtgtttgacaaacac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26755218 |
caaatagaagcatacaaactgactacctgtccaacgacacagatcatgagtatgaccaatcttatttggaagaggaaaaatttcagtgtttgacaaacac |
26755317 |
T |
|
| Q |
116 |
agaagataatgatagagaaaatgaaaaacatgtggaaaatgaggctggttgggcctcaatgatacttaatggagatacaattgacaatagtgatggtcac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26755318 |
agaagataatgatagagaaaatgaaaaacatgtggaaaatgaggctggttgtgcctcaatgatacttaatggagatacaattgacaatagtgatggtcac |
26755417 |
T |
|
| Q |
216 |
gagatctgtgaaacctgcaagattgaagagagccgtgaagatagcaacacaaacctagagaataa |
280 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26755418 |
gggatctgtgaaacctgcaagattgaagagagccgtgaagatagcaacacaaacctagagaataa |
26755482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University