View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_19 (Length: 281)
Name: NF6161_low_19
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_19 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19910161 - 19910356
Alignment:
| Q |
1 |
atcttcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaag |
100 |
Q |
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| T |
19910161 |
atcttcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatctcaggtataatgagacctattatctattccatgtc-ttgatttaag |
19910259 |
T |
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| Q |
101 |
aaatgcaccgagaagacctcaactaagttctagtgatccttttatcaaacaatta-gaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
196 |
Q |
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| T |
19910260 |
aaatgcatagagaagacctcaactaagttctcgtgatccttttatcatacaattataaatgcaaaaaatagcattcatcaaagtgaatgacttgtag |
19910356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 1661378 - 1661534
Alignment:
| Q |
7 |
attgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaatgc |
106 |
Q |
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| T |
1661378 |
attgttaaattcaaaaatgggaggagaaaaaacaataagttttaaattacaggcataatgggagctattatctattccatgtctt-gatttaagaaatgc |
1661476 |
T |
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| Q |
107 |
accgagaagacctcaactaagttctagtgatccttttatcaaacaattagaatgcaaa |
164 |
Q |
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| T |
1661477 |
actgagaagacctcaactaagttttaatgatccttttatcaaacagttagaatgcaaa |
1661534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 19910343 - 19910399
Alignment:
| Q |
209 |
tgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccattt |
265 |
Q |
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| T |
19910343 |
tgaatgacttgtagatgatactaaattggacactgccaaaacattgcatttccattt |
19910399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 55877858 - 55877810
Alignment:
| Q |
116 |
acctcaactaagttctagtgatccttttatcaaacaattagaatgcaaa |
164 |
Q |
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| T |
55877858 |
acctcaactaaattcaagcgatccttttatcatacacttagaatgcaaa |
55877810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 19963906 - 19963663
Alignment:
| Q |
5 |
tcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaat |
104 |
Q |
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| T |
19963906 |
tcattgttaaattcaaaaattggaggagaaaaaacaataagttttaaatttcaggcataatgagagctattatctattccatatc-ttgatttaagaaat |
19963808 |
T |
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| Q |
105 |
gcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaatgcaaaaaatagcattcatcaaagtgaatgacttgtagtaatnnnn |
204 |
Q |
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| T |
19963807 |
gcaaagagaagacctcgactaagttctaatgatccttttgtcaaacagttaaaatgc--aaagtagcattcatcgaagtgaatgacttgtagtactaaca |
19963710 |
T |
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| Q |
205 |
nnnntgaatgacttgtagatgatactaaattgggtactgccaaagcat |
252 |
Q |
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| T |
19963709 |
aaagtgaatgac-tataaatgatactaaattgggcactgccaaagcat |
19963663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 25490331 - 25490145
Alignment:
| Q |
5 |
tcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaat |
104 |
Q |
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||||||||||||| ||||||| ||||||||||||| |||||||||||| | | ||||||||| | |||| ||||| |||||||| ||||||| || | |
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| T |
25490331 |
tcattgtcaaatttaaaaattcgagaagaaaaaaccgtaagttttaaatctaaagcataatgagagccattacctatttcatgtctt-gatttaa-aatt |
25490234 |
T |
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| Q |
105 |
gcaccgagaagacctcaactaagttctagtgatccttttatcaaacaattagaatgcaaaaaatagcattcatcaaagtgaatgacttgta |
195 |
Q |
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| T |
25490233 |
gcatagagaagacctcaacttagttctagtgatccttttatcaaacggttataatgc--aaagtagctttcatcaaagtgaatgacttgta |
25490145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 13225 - 13326
Alignment:
| Q |
5 |
tcattgtcaaattcaaaaattggagaagaaaaaacaataagttttaaatttcagatataatgagacctattatctattccatgtctttgatttaagaaat |
104 |
Q |
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||||||||| ||||| ||||||||||||||| ||| | |||||||||||||| ||||| ||| ||||| || ||||||||| | ||||||| |||| |
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| T |
13225 |
tcattgtcagattcagaaattggagaagaaacaaccttgagttttaaatttcatgcataataggacttattacctcttccatgtc-tagatttaataaat |
13323 |
T |
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| Q |
105 |
gca |
107 |
Q |
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||| |
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| T |
13324 |
gca |
13326 |
T |
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