View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6161_low_24 (Length: 264)
Name: NF6161_low_24
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_24 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 24284780 - 24285027
Alignment:
| Q |
18 |
tatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgatgtga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24284780 |
tatattaccaggatctgaagaattgagaagagaagcggaacccattagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgatgtga |
24284879 |
T |
|
| Q |
118 |
attttgatgaatcgttttgttgtagat-tgaaagaaagtgagggttttgtgaaatggtgtaatggatttggcgggggatgaatttttgggtatagggctt |
216 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24284880 |
attttgatgaatcgttatgttgtagatgggaaagaaagtgagggttttgtgaaatggtgtaatgcatttggcgggggatgaatttttgggtatagggctt |
24284979 |
T |
|
| Q |
217 |
ttcgcgccttcttcttacaattttcatttgggaaatgtataactttat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24284980 |
ttcgcgccttcttcttacaattttcatttgggaaatgtataactttat |
24285027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 12034999 - 12034825
Alignment:
| Q |
18 |
tatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgatgtga |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
12034999 |
tatagtaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgaaaaacgcggaattttgaagaatcgatgtga |
12034900 |
T |
|
| Q |
118 |
attttgatgaatcgttttgttgtagattgaaagaaagtgagggttttgtgaaatggtgtaatggatttggcgggg |
192 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
12034899 |
attttgatgaatggttttgttgtagatggaaagaaagtgagggttttgtaaaatggtgtgatggatttggcgggg |
12034825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 20167108 - 20167222
Alignment:
| Q |
17 |
atatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgatgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||| || |
|
|
| T |
20167108 |
atatattaccaggatctgaagaattgagaagagaagcggaacccatgacttgaatgattttcctaatatgcaaaacgcggaattttgatgaatcgaattg |
20167207 |
T |
|
| Q |
117 |
aattttgatgaatcg |
131 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20167208 |
aattttgatgaatcg |
20167222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 20167225 - 20167339
Alignment:
| Q |
114 |
gtgaattttgatgaatcgttttgttgtagattgaaagaaagtgagggttttgtgaaatg--gtgtaatggatttggcgggggatgaatttttg--ggtat |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| | |||| |||||||||| |||| ||| | ||||| ||||| |
|
|
| T |
20167225 |
gtgaattttgatgaatcgttttgttgcagatggaaagaaagtgaggattttgtgaaagggtgtgtgatggatttggaggggaatgcagttttgatggtat |
20167324 |
T |
|
| Q |
210 |
agggcttttcgcgcc |
224 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
20167325 |
aaggattttcgcgcc |
20167339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 8065763 - 8065916
Alignment:
| Q |
18 |
tatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttccttatatgcaaaacgcgaaattttgacgaatcgatgtga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
8065763 |
tatattaccaggatctgaagaattgagaagagaagcggaacccatgagttgaatgattttcctta-------------gagttttgttgaatcgaggtga |
8065849 |
T |
|
| Q |
118 |
attttgatgaatcg--ttttgttgtagattgaaagaaagtgagggttttgtgaaatggtgtaatgga |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
8065850 |
attttgatgaatcgttttttgttgtagatggaaagaaagtgagggttttgtgaaattgtgtgatgga |
8065916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University