View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_25 (Length: 249)
Name: NF6161_low_25
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 171984 - 172200
Alignment:
| Q |
26 |
ccatatgtactcaatttaatccaatcaataagaggaggcacccattaaattcttcgccatataggcacctttcgctacattttagtagcactcttgtaat |
125 |
Q |
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| T |
171984 |
ccatatgtactcaatttaatccaatcaataagaggaggcacccattaaattcttcgccatataggcacctttcgctacattttagtagcactcttgtaat |
172083 |
T |
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| Q |
126 |
cacatcctgccacggtctagatggaagaaaaaatccatcatcatggttggacttattcctccaacatcaaagaaaatggcaagaagtttcccagaaagct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172084 |
cacatcctgccacggtctagatggaagaaaaaatccatcatcatggttggacttattcctccaacatcaaagaaaatggcaagaagtttcccagaaagct |
172183 |
T |
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| Q |
226 |
gcccaattattcatctc |
242 |
Q |
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||||||||||||||||| |
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| T |
172184 |
gcccaattattcatctc |
172200 |
T |
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