View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_26 (Length: 248)
Name: NF6161_low_26
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33645258 - 33645346
Alignment:
| Q |
1 |
tctgttgccacctactcattggttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
89 |
Q |
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| T |
33645258 |
tctgttgccacctactcattgtttgtcatcaacctgcaaaatacaaacatattttcatgggtatatgttctgcttcataccatgaagtg |
33645346 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 33056900 - 33056858
Alignment:
| Q |
46 |
aacatattttcatgggtatatgttctgcttcataccatgaagt |
88 |
Q |
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| T |
33056900 |
aacatattttcatgggtgtatgttctgtttcataccatgaagt |
33056858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 33648495 - 33648549
Alignment:
| Q |
178 |
gtatgatttggtcatttactaaaaagtgacatttccataattcctcaaattccta |
232 |
Q |
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| T |
33648495 |
gtatgatttggtcatgtaccaaaaagtgacatttccacacttcctcagattccta |
33648549 |
T |
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