View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_28 (Length: 240)
Name: NF6161_low_28
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45512833 - 45513056
Alignment:
| Q |
1 |
cttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacgacaccagttggatttcaaaccttcactcactcaaacaccttgac |
100 |
Q |
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| T |
45512833 |
cttcaattactattaccttacgcaatttgaagagagagaattacaaatggatgacggcaccagttggatttcaaaccttcactcactcaaacaccttgac |
45512932 |
T |
|
| Q |
101 |
ttgagtggtattcgtctcaatgacaagcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgaca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512933 |
ttgagtggtattcgtctcaatgacacgcgcaacttgttccaggtactcaatacacttccttctttattaaatctttcactgtctggatgtagagttgaca |
45513032 |
T |
|
| Q |
201 |
attcactcattcctcgttatgctt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45513033 |
attcactcattcctcgttatgctt |
45513056 |
T |
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