View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_29 (Length: 240)
Name: NF6161_low_29
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 171790 - 171575
Alignment:
| Q |
1 |
caatgtagcatgatatagattggtaaagcgtattatcaggcttttggaaatgaattgttgtgcaaatactttggctaatgaaggatgtaatgggggcttg |
100 |
Q |
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| T |
171790 |
caatgttgcatgatatagattggtaaagcgtattatcaggcttttggaaatgaattgttgtgcaaatactttggctaatgaaggatgtaatgggggattg |
171691 |
T |
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| Q |
101 |
tcttcaattatttatgagat--------atcaatctaggcatttgttattcactgatgtctgatggtatggaagttgtggaaccgaaccaaaataaatcg |
192 |
Q |
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| T |
171690 |
tcttcaattatttatgagatatgtctggatcaatctaggcatttgttattca-------ctgatggtatggaagttgtggaaccgaaccaaaataaacgg |
171598 |
T |
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| Q |
193 |
gtgatattcaatttggtttggtt |
215 |
Q |
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| T |
171597 |
gtgatattcaatttggtttggtt |
171575 |
T |
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