View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6161_low_3 (Length: 493)
Name: NF6161_low_3
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 476
Target Start/End: Complemental strand, 30181748 - 30181291
Alignment:
| Q |
24 |
agggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatc |
123 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30181748 |
agggaagaagatgaatggcattggaatggtgatgttaacactactataaaacaattagtagcgaaaacggtaatatatacaaaatcaattatctccgatc |
30181649 |
T |
|
| Q |
124 |
atgattc-aaatgttatggcttgcattcccacattaattgctgtttctttt-tcttgttcatggatatccagaactctaaggatgattgtgattgtcctc |
221 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||| |||||||| |
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|
| T |
30181648 |
atgattcaaaatgttatggcttgcattctcac----tttgctgttttttttctcttgttcatgaatatccagagctctaaggatgattgtgtttgtcctc |
30181553 |
T |
|
| Q |
222 |
aaaatttgattgaaggctcgagtggatgattcgtcgcaaccacctggtaatttagaactagcacattgggctttttatttattataatttcatgttcttc |
321 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30181552 |
aaaacttgattgaaggctcaagtagatgattcgtctcaaccacatggtaatttagaactagcacattgggctttttatttattat-atttcatgttcttc |
30181454 |
T |
|
| Q |
322 |
aatatttttgtgttagtttctttgaca------attattctttttctgtcattttgaaaattattcatt--ttctgtttcccactgtaggggggtgtatc |
413 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
30181453 |
aataattttgtgttagtttctttggcatacattattatcctttttccgtcattttgaaaattattctttcattctgtttcccactgcaggggggtgtatc |
30181354 |
T |
|
| Q |
414 |
catatgttttgggtgtgaggctaatcggctaaactctaatggcacgaggcgtttacattcatc |
476 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||| ||||||| || ||||||||| ||||| |
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| T |
30181353 |
catatgttttgtgtgcgaggctaatcggctaaactcaaatggcatgaagcgtttacaatcatc |
30181291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 30282107 - 30282363
Alignment:
| Q |
37 |
aatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaat-ggtaatatatacaaaatcaattatctccgatcatgattcaaatg |
135 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||| | |||| | | ||||||| |||||| | ||| |||| || |||||| ||||||||||||||| |
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|
| T |
30282107 |
aatgtcattggaatggtgacattaatactactataagaaaatttgctgcgaaaaaaggtaatgtttaccaaattgatcatctccaatcatgattcaaatg |
30282206 |
T |
|
| Q |
136 |
ttatggcttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaa |
235 |
Q |
| |
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||| | |||||||| |||| | | |||| |||||||||||| ||| |||||||||||||||||||||| || | ||||||||||||||||| |||| |
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|
| T |
30282207 |
ctattgtttgcattctcacact----gttgttgctttttcttgtttatgaatatccagaactctaaggatgaatgagtttgtcctcaaaatttgaatgaa |
30282302 |
T |
|
| Q |
236 |
ggctcgagtggatgattcgtcgcaaccacctggtaatttagaactagcacattgggctttt |
296 |
Q |
| |
|
||||| ||| ||| |||| ||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
30282303 |
ggctcaagtcgataattcctcgcaaccacctggtaattcagaatcagcacattgggctttt |
30282363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 30254517 - 30254646
Alignment:
| Q |
21 |
gtaagggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccg |
120 |
Q |
| |
|
|||| |||| ||||| | ||||||||||| |||||| |||| ||| | || | |||| ||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
30254517 |
gtaaaggaacaagatgactggcattggaacggtgaccttaatactgcaataagaaaatatgtagctaaaatggtaatatatacaaaattgattatctccg |
30254616 |
T |
|
| Q |
121 |
atcatgattcaaatgttatggcttgcattc |
150 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
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|
| T |
30254617 |
atcataattcaaatgttatggcttgcattc |
30254646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 30070629 - 30070806
Alignment:
| Q |
31 |
aagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaa--tatatacaaaatcaattatctccgatcatgat |
128 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||| | |||| | ||||| |||| ||||| | ||||||||||| ||||||||| |||| | |
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|
| T |
30070629 |
aagatgaatggcattggaatggtgacattaatactactataagaaaatttgtagcaaaaacggtaatgtctatacaaaatcgattatctccaatcacaaa |
30070728 |
T |
|
| Q |
129 |
tcaaatgttatggc-ttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattg |
210 |
Q |
| |
|
|||| |||||| || |||||||| |||||| ||| | |||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
30070729 |
tcaattgttatcgctttgcattctcacatt-gttg----tgctttttcttgtttatgaatatccagaactctaaggatgattg |
30070806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 30177390 - 30177592
Alignment:
| Q |
21 |
gtaagggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatat--atacaaaatcaattatctc |
118 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||| |||| |||||||| | |||| | ||||| ||| |||||| | |||||||||| || |||| |
|
|
| T |
30177390 |
gtaaaggaaggagatgaatggcattggaatggtgaccttaatactactataagaaaatttgtagctaaaccggtaatgtctatacaaaatctatg-tctc |
30177488 |
T |
|
| Q |
119 |
cgatcatgattcaaatgttatggcttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtc |
218 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |||||| ||| | | |||||||||| | ||||||||||||||||| |||||| | ||||| |
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|
| T |
30177489 |
caatcatgattcaaatgttatagcttgcattctcacatt-gttg----tgccttttcttgtttgcgagtatccagaactctaagggtgattgagtttgtc |
30177583 |
T |
|
| Q |
219 |
ctcaaaatt |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
30177584 |
ctcaaaatt |
30177592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 278
Target Start/End: Complemental strand, 30131360 - 30131125
Alignment:
| Q |
44 |
ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | | || ||||| |||||| ||||||||| ||||| ||| || ||| |||| | |||||||| |
|
|
| T |
30131360 |
ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct |
30131261 |
T |
|
| Q |
144 |
tgcattcccacattaa--ttgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcg |
241 |
Q |
| |
|
| ||||| |||||| | |||| ||| ||||| || || || |||| |||||||||| |||||||| | ||||||||||| ||| | || ||| || |
|
|
| T |
30131260 |
tccattctcacattgatgttgcctttttttttttttttttctgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtca |
30131162 |
T |
|
| Q |
242 |
agtggatgattcgtcgcaaccacctggtaatttagaa |
278 |
Q |
| |
|
| | ||| |||||| |||| |||||||||||| |||| |
|
|
| T |
30131161 |
actagataattcgttgcaatcacctggtaattcagaa |
30131125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 278
Target Start/End: Complemental strand, 30035178 - 30034946
Alignment:
| Q |
44 |
ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | | || ||||| |||||| ||||||||| ||||| ||| || ||| |||| | |||||||| |
|
|
| T |
30035178 |
ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct |
30035079 |
T |
|
| Q |
144 |
tgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcgag |
243 |
Q |
| |
|
| ||||| |||||| | || || | ||| | || || ||| |||| |||||||||| |||||||| | ||||||||||| ||| | || ||| || | |
|
|
| T |
30035078 |
tccattctcacattga-tgttgcctttttattttttttatgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtcaac |
30034981 |
T |
|
| Q |
244 |
tggatgattcgtcgcaaccacctggtaatttagaa |
278 |
Q |
| |
|
| ||| |||||| |||| |||||||||||| |||| |
|
|
| T |
30034980 |
tagataattcgttgcaatcacctggtaattcagaa |
30034946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 278
Target Start/End: Complemental strand, 30229316 - 30229084
Alignment:
| Q |
44 |
ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | | || ||||| |||||| ||||||||| ||||| ||| || ||| |||| | |||||||| |
|
|
| T |
30229316 |
ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct |
30229217 |
T |
|
| Q |
144 |
tgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcgag |
243 |
Q |
| |
|
| ||||| |||||| | || || | ||| | || || ||| |||| |||||||||| |||||||| | ||||||||||| ||| | || ||| || | |
|
|
| T |
30229216 |
tccattctcacattga-tgttgcctttttattttttttatgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtcaac |
30229119 |
T |
|
| Q |
244 |
tggatgattcgtcgcaaccacctggtaatttagaa |
278 |
Q |
| |
|
| ||| |||||| |||| |||||||||||| |||| |
|
|
| T |
30229118 |
tagataattcgttgcaatcacctggtaattcagaa |
30229084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 30025519 - 30025632
Alignment:
| Q |
44 |
ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | | || ||||| |||||| ||||||||| ||||| ||| || ||| |||| | |||||||| |
|
|
| T |
30025519 |
ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct |
30025618 |
T |
|
| Q |
144 |
tgcattcccacatt |
157 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
30025619 |
tccattctcacatt |
30025632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 30116603 - 30116490
Alignment:
| Q |
44 |
ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct |
143 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | | || ||||| |||||| ||||||||| ||||| ||| || ||| |||| | |||||||| |
|
|
| T |
30116603 |
ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct |
30116504 |
T |
|
| Q |
144 |
tgcattcccacatt |
157 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
30116503 |
tccattctcacatt |
30116490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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