View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6161_low_4 (Length: 447)

Name: NF6161_low_4
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6161_low_4
NF6161_low_4
[»] chr3 (6 HSPs)
chr3 (19-378)||(34726106-34726466)
chr3 (381-437)||(46595792-46595848)
chr3 (381-432)||(30766053-30766104)
chr3 (381-413)||(37267567-37267599)
chr3 (381-434)||(4865124-4865177)
chr3 (381-434)||(55041525-55041578)
[»] chr7 (3 HSPs)
chr7 (381-437)||(20389918-20389974)
chr7 (381-435)||(5790570-5790624)
chr7 (376-434)||(13946646-13946704)
[»] chr6 (6 HSPs)
chr6 (381-437)||(4434991-4435047)
chr6 (381-437)||(11178362-11178418)
chr6 (381-437)||(28057050-28057106)
chr6 (376-437)||(4091336-4091397)
chr6 (381-437)||(2314484-2314540)
chr6 (381-435)||(32444478-32444532)
[»] chr5 (5 HSPs)
chr5 (381-436)||(37720032-37720087)
chr5 (385-437)||(9263661-9263713)
chr5 (45-87)||(15124128-15124170)
chr5 (382-435)||(30441314-30441367)
chr5 (381-413)||(41290053-41290085)
[»] chr1 (5 HSPs)
chr1 (376-437)||(25867301-25867362)
chr1 (381-437)||(16961675-16961731)
chr1 (376-413)||(29395483-29395520)
chr1 (381-434)||(35161958-35162011)
chr1 (381-413)||(17962971-17963003)
[»] chr4 (2 HSPs)
chr4 (382-437)||(47520776-47520831)
chr4 (381-432)||(7131306-7131357)
[»] chr8 (2 HSPs)
chr8 (382-413)||(11075265-11075296)
chr8 (376-434)||(1662597-1662655)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 34726466 - 34726106
Alignment:
Q  19 gatattttatagtattttatattttcaaataaagaaaccttggactggtttaattacccaaaccacaagcagtactcacattttgggcagttacccaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34726466 gatattttatagtattttatattttcaaataaagaaaccttggactggtttaattacccaaaccacaagcagtactcacattttggccagttacccaatt 34726367  T
Q  119 gatttttaaatttagccagtataaagactggctagaatatctagaaa-ccactatctggttaaattggtctacaccaatatacctagaaaatcgataacg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726366 gatttttaaatttagccagtataaagactggctagaatatctagaaatccagtatctggttaaattggtctacaccaatatacctagaaaatcgataacg 34726267  T
Q  218 ttattgtatatttaatatgattccatgtggcattatatagttataaagaatatagccaaaatataacccatgaaaaattggaatgtggttacagcatcac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34726266 ttattgtatatttaatatgattccatgtggcattatatagttataaaaaatatagccaaaatataacccatgaaaaattggaatgtggttacagcatcac 34726167  T
Q  318 aagaaaatgaacacggtgcaggcctcttaatctcagcataatagcagagaaggaaaacaat 378  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34726166 aagaaaatgaacacggtgaaggcctcttaatctcagcataatagcagagaaggaaaacaat 34726106  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 46595848 - 46595792
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595848 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 46595792  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 30766104 - 30766053
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatc 432  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30766104 ttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatc 30766053  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 37267599 - 37267567
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaa 413  Q
    |||||||||||||||||||||||||||||||||    
T  37267599 ttattatctaatcctaaactacaatgcaaacaa 37267567  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 4865124 - 4865177
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 434  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  4865124 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 4865177  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 55041578 - 55041525
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 434  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  55041578 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 55041525  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 20389918 - 20389974
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389918 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 20389974  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 5790624 - 5790570
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 435  Q
    ||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||    
T  5790624 ttattatctaatcatgaactacaatgtaaacaaaacttctaaaaccctaatccta 5790570  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 13946646 - 13946704
Alignment:
Q  376 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 434  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  13946646 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 13946704  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 4434991 - 4435047
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4434991 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 4435047  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 11178362 - 11178418
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11178362 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatg 11178418  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 28057050 - 28057106
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28057050 ttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatg 28057106  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 4091336 - 4091397
Alignment:
Q  376 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4091336 aatccttattatctaatcctaaactacaatgcaaacaaaacatgcaaaaccctaatcctatg 4091397  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 2314540 - 2314484
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  2314540 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 2314484  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 32444478 - 32444532
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 435  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32444478 ttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatccta 32444532  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 37720087 - 37720032
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37720087 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 37720032  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 9263713 - 9263661
Alignment:
Q  385 tatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  9263713 tatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 9263661  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 15124170 - 15124128
Alignment:
Q  45 aaataaagaaaccttggactggtttaattacccaaaccacaag 87  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  15124170 aaataaagaaaccttggattggttcaattacccaaaccacaag 15124128  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 30441367 - 30441314
Alignment:
Q  382 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 435  Q
    ||||||||||||||||  ||||||||| |||| || ||||||||||||| ||||    
T  30441367 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 41290053 - 41290085
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaa 413  Q
    |||||||||||||||||||||||||| ||||||    
T  41290053 ttattatctaatcctaaactacaatgtaaacaa 41290085  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 25867301 - 25867362
Alignment:
Q  376 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25867301 aatccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaattctatg 25867362  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 16961731 - 16961675
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16961731 ttatcatctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcctatg 16961675  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 29395520 - 29395483
Alignment:
Q  376 aatctttattatctaatcctaaactacaatgcaaacaa 413  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  29395520 aatccttattatctaatcctaaactacaatgcacacaa 29395483  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 35161958 - 35162011
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 434  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  35161958 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 35162011  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 413
Target Start/End: Complemental strand, 17963003 - 17962971
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaa 413  Q
    |||||||||||||||||||||||| ||||||||    
T  17963003 ttattatctaatcctaaactacaacgcaaacaa 17962971  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 47520776 - 47520831
Alignment:
Q  382 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 437  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  47520776 tattatctaatcctaaactacaatataaacaaaacatctaaaaccctaatcctatg 47520831  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 7131306 - 7131357
Alignment:
Q  381 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatc 432  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  7131306 ttattacctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatc 7131357  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 11075296 - 11075265
Alignment:
Q  382 tattatctaatcctaaactacaatgcaaacaa 413  Q
    ||||||||||||||||||||||||||||||||    
T  11075296 tattatctaatcctaaactacaatgcaaacaa 11075265  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 1662655 - 1662597
Alignment:
Q  376 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 434  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  1662655 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 1662597  T

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