View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6161_low_6 (Length: 400)

Name: NF6161_low_6
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6161_low_6
NF6161_low_6
[»] chr4 (5 HSPs)
chr4 (20-390)||(48962666-48963036)
chr4 (20-369)||(48958540-48958895)
chr4 (212-385)||(48965706-48965879)
chr4 (222-370)||(48911981-48912129)
chr4 (269-328)||(48951668-48951727)
[»] chr6 (2 HSPs)
chr6 (20-388)||(12589603-12589971)
chr6 (113-386)||(12482991-12483264)
[»] chr2 (3 HSPs)
chr2 (229-355)||(13440607-13440733)
chr2 (229-370)||(13448755-13448896)
chr2 (229-355)||(13455241-13455367)
[»] scaffold0536 (2 HSPs)
scaffold0536 (237-388)||(6162-6313)
scaffold0536 (239-388)||(10148-10297)
[»] chr5 (2 HSPs)
chr5 (229-348)||(28385748-28385867)
chr5 (220-361)||(12541086-12541227)
[»] chr8 (1 HSPs)
chr8 (229-328)||(12641124-12641223)
[»] chr7 (1 HSPs)
chr7 (224-310)||(3417171-3417257)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 48963036 - 48962666
Alignment:
Q  20 gccttcactggtttctccatatttactgtctccctcatagaatcccttagaataaacccctcattgaaatctcacacagatttggattcgttagttgttc 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  48963036 gccttcactggtttctccatatttactgtctccctcatggaatcccttagaataaacccctcattgaaatctcacacagatttggatttgttcgttgttc 48962937  T
Q  120 caaattttcctcactctttcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggact 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962936 caaattttcctcactctatcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggact 48962837  T
Q  220 cattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctctt 319  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48962836 cattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctctt 48962737  T
Q  320 attcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctgtg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962736 attcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctgtg 48962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 48958895 - 48958540
Alignment:
Q  20 gccttcactggtttctccatatttactgtctccctcatagaatcccttagaataaacccctcattgaaatctcacacagatttg------gattcgttag 113  Q
    |||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||| |||||    |||||||| |||| |      | ||| ||      
T  48958895 gccttcactggtttctccctctttaccgtctccctcatggaatcccttagaataaacccttcattttgttctcacacggattcgagtccaggttcattca 48958796  T
Q  114 ttgttccaaattttcctcactctttcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaa 213  Q
     |||||||||||||||||| ||  |||||||||| ||||||||||| |||  |||||||||||||||||||||| ||| ||||||||| || ||||  ||    
T  48958795 ctgttccaaattttcctcattccatcaccttgtgtacaaagccgccaaagatattcaccggattcatggaaatgatgcttgagacaatcctcaaaagtaa 48958696  T
Q  214 tggactcattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtt 313  Q
     ||||||||  ||| |||||||  ||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||| ||||| | |    
T  48958695 gggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgct 48958596  T
Q  314 tctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgt 369  Q
    |||||||||||| || || ||||||||||| |||| |||||| |||||| ||||||    
T  48958595 tctcttattcgccaaaccattcaagagaaatcagagaggggaaatgagaatgttgt 48958540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 212 - 385
Target Start/End: Complemental strand, 48965879 - 48965706
Alignment:
Q  212 aatggactcattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccag 311  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||| |||  || | || | ||  | ||| ||||| |||||||||||||| |||||||    
T  48965879 aatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatcttggtccag 48965780  T
Q  312 tttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgt 385  Q
     |||||||||||| ||| | ||||||||||||||||| |||||||| |||||||  ||| |||| |||||||||    
T  48965779 cttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgt 48965706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 48911981 - 48912129
Alignment:
Q  222 ttgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttat 321  Q
    |||||| ||| || ||||||||||||||||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||| ||||||| |||||||||    
T  48911981 ttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttat 48912080  T
Q  322 tcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtg 370  Q
    ||||| | |  |||||||||| || || || ||| | ||||||||||||    
T  48912081 tcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtg 48912129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 48951727 - 48951668
Alignment:
Q  269 tacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    |||||||||||||  |||||||||||||||||||| ||||| |  |||||| ||||||||    
T  48951727 tacgagaaaaccatcggtcacaaggcttggcatcttggtccggcctctcttgttcgcaaa 48951668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 12589603 - 12589971
Alignment:
Q  20 gccttcactggtttctccatatttactgtctccctcatagaatcccttagaataaacccctcattgaaatctcacacagatttggattcgttagttgttc 119  Q
    |||||||| | ||||||| | ||||| ||||| ||  | ||||||||||||| |||||  | | |  | |||||||  ||||| | ||| || |||||||    
T  12589603 gccttcaccgttttctccctctttacagtctctcttttggaatcccttagaacaaaccatttacttcattctcacatggatttaggttcctttgttgttc 12589702  T
Q  120 caaattttcctcactctttcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggact 219  Q
    |||||||||||||   | ||||||| ||||| || || || ||| | ||||||| | ||||||||| | ||| |||| |||| || ||||  ||||||||    
T  12589703 caaattttcctcatcgtatcaccttatgcactaatccaccaaaggcgttcaccgaagtcatggaaacgatgcttgaggcaatactcaaaagtaatggact 12589802  T
Q  220 cattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctctt 319  Q
    |||||| | |||||||||||||||||| ||  |||||||  || ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  12589803 cattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatcttggtccagcttctctt 12589902  T
Q  320 attcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctg 388  Q
    |||| |||| | ||||||||||||||||| |||||| ||||||||||||||  ||| ||||||||||||    
T  12589903 attcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctg 12589971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 386
Target Start/End: Original strand, 12482991 - 12483264
Alignment:
Q  113 gttgttccaaattttcctcactctttcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaa 212  Q
    |||||||||||||||||||||  | |||||||||||||||| || || |||   |||||   |||| | |||||| ||| ||| ||||| |  ||||  |    
T  12482991 gttgttccaaattttcctcaccatatcaccttgtgcacaaaaccaccaaagatgttcacaatattcctagaaatgatgcttgaaacaatacacaaaagta 12483090  T
Q  213 atggactcattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagt 312  Q
    || ||||||| ||||  | |||| ||||||| || ||  |||| ||| ||||||||||||| |||| ||  |||||||||||||||||| | ||||||      
T  12483091 atagactcatcgtcaatagcttcactgaactggatggcaaagaatgcgtcgaacactacgaaaaaatcatgggtcacaaggcttggcatttaggtccaca 12483190  T
Q  313 ttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtc 386  Q
    ||| |||||| |  || | |||||||| || ||||| |||||| | |||||||||||| |||| || |||||||    
T  12483191 ttcacttatttgtgaaactgttcaagaaaaggcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtc 12483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 229 - 355
Target Start/End: Complemental strand, 13440733 - 13440607
Alignment:
Q  229 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||  |||||||||||| |||    
T  13440733 caacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaa 13440634  T
Q  329 tccgttcaagagaaagcagaaagggga 355  Q
     || |||||||||||||||| ||||||    
T  13440633 accattcaagagaaagcagagagggga 13440607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 370
Target Start/End: Complemental strand, 13448896 - 13448755
Alignment:
Q  229 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    |||||||  ||||||||| || |||||||||||  |||||||||||||| |||| |||||||||| ||||||||| ||||||  ||||||||||||||||    
T  13448896 caacttcagtgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaa 13448797  T
Q  329 tccgttcaagagaaagcagaaaggggacatgagagtgttgtg 370  Q
     | | |||||||||| |||| |||||| ||||| ||| ||||    
T  13448796 actgctcaagagaaatcagagaggggaaatgagggtgctgtg 13448755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 355
Target Start/End: Complemental strand, 13455367 - 13455241
Alignment:
Q  229 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    |||||||  |||| |||| || |||||||||||| |||||||||| ||||| ||||||||||||| ||||||| | ||||||  |||||||||| ||| |    
T  13455367 caacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcaga 13455268  T
Q  329 tccgttcaagagaaagcagaaagggga 355  Q
     |||||||||| ||| |||| ||||||    
T  13455267 accgttcaagaaaaatcagagagggga 13455241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 6162 - 6313
Alignment:
Q  237 ctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttca 336  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||||| | | | |||||    
T  6162 ctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattcgtagaactgttca 6261  T
Q  337 agagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctg 388  Q
    ||| |||||| | ||||||||  | ||||||||| | || || |||||||||    
T  6262 agaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctg 6313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 10148 - 10297
Alignment:
Q  239 gaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaag 338  Q
    |||||||||||| || ||  ||||||||||||| ||||||| || ||||| || |||||||||||  |||||| || |||| |||| | | | |||||||    
T  10148 gaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttagtccagcttatcttgttcgtagaactgttcaag 10247  T
Q  339 agaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctg 388  Q
    ||||| |||| || ||| |  ||||||||||| | || || |||||||||    
T  10248 agaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctg 10297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 348
Target Start/End: Complemental strand, 28385867 - 28385748
Alignment:
Q  229 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    |||||| | ||||||||| || ||||||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||  |||  ||||||| |||    
T  28385867 caactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaa 28385768  T
Q  329 tccgttcaagagaaagcaga 348  Q
     | |||||||||||||||||    
T  28385767 actgttcaagagaaagcaga 28385748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 220 - 361
Target Start/End: Complemental strand, 12541227 - 12541086
Alignment:
Q  220 cattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctctt 319  Q
    |||| ||| |||||| | ||||||||| || ||||||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||  |||| ||    
T  12541227 cattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttctttt 12541128  T
Q  320 attcgcaaatccgttcaagagaaagcagaaaggggacatgag 361  Q
    ||||  |||  | |||||||||||||||  |||||| |||||    
T  12541127 attcagaaaaacattcaagagaaagcagggaggggaaatgag 12541086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 12641124 - 12641223
Alignment:
Q  229 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 328  Q
    |||||| | ||||||||| |||||||| |||||| ||||||| ||||||||||  ||| |||||||||||||||| ||||||  || |||||||||||||    
T  12641124 caactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcgcaaa 12641223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 3417171 - 3417257
Alignment:
Q  224 gtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtcca 310  Q
    |||| |||||||  ||||||||| || |||||||| ||  ||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  3417171 gtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtcca 3417257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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