View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6161_low_7 (Length: 397)
Name: NF6161_low_7
Description: NF6161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6161_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 7148300 - 7148668
Alignment:
| Q |
13 |
tcatcaaccatacaacaaaatcagtctttttgtaatcataattcatgcaaagacaaccctttagcacactcaaactaggagttgaacactcttccttttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148300 |
tcatcaaccatacaacaaaatcagtctttttgtaatcataattcatgcaaagacaaccctttagcacactcaaactaggagttgaacactcttccttttc |
7148399 |
T |
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| Q |
113 |
ataatcaggtggaagcacttccctataagtttccttctccaaatccaaagaaacaatagtccaaaatgaacttgaaccaattgagtaattagaagcccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7148400 |
ataatcaggtggaagcacttccctataagtttccttctccaaatccaaagaaacaatagtccaaaaagaacttgaaccaattgagtaattagaagcccaa |
7148499 |
T |
|
| Q |
213 |
ttgagtgtaccactaacaaatttcccagatgaattttggtaaggtgaaacaccatgaggaaaatcatgaatcttcctccaagtattagtagccatactat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148500 |
ttgagtgtaccactaacaaatttcccagatgaattttggtaaggtgaaacaccatgaggaaaatcatgaatcttcctccaagtattagtagccatactat |
7148599 |
T |
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| Q |
313 |
aaaccttaactttagattcactgaaaaactcattaggatcacaaaaaacagcaacaactttgtaatcat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148600 |
aaaccttaactttagattcactgaaaaactcattaggatcacaaaaaacagcaacaactttgtaatcat |
7148668 |
T |
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