View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6162_high_1 (Length: 603)
Name: NF6162_high_1
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6162_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 323 - 593
Target Start/End: Original strand, 31797184 - 31797454
Alignment:
| Q |
323 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
422 |
Q |
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| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
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| Q |
423 |
atacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaatcctctagaattttacgagttagta |
522 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattctgagcatgctaatcatgtatccatggtagaagatgcagaatcctctagacttttacgagttagta |
31797383 |
T |
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| Q |
523 |
gtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
593 |
Q |
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| T |
31797384 |
gtcattactcttgatgattatctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
31797454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 136 - 326
Target Start/End: Original strand, 31796965 - 31797155
Alignment:
| Q |
136 |
agttaaaggaaagcagatgaatataggcattgctaannnnnnnnagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaat |
235 |
Q |
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| T |
31796965 |
agttaaaggaaagcagatgaatataggcattgctaattttttttagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaat |
31797064 |
T |
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| Q |
236 |
acagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
326 |
Q |
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| T |
31797065 |
acagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
31797155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 330 - 497
Target Start/End: Original strand, 31791048 - 31791214
Alignment:
| Q |
330 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
429 |
Q |
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||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||| || | ||||||||| | |||||||||||| || |||||| |
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| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacatt-gaggtacaag |
31791146 |
T |
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| Q |
430 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaa |
497 |
Q |
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| T |
31791147 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgcatctatggtagaagatgcagaa |
31791214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 31796796 - 31796912
Alignment:
| Q |
19 |
gaatcaacgattcatatggagtggttattcaacaacgctctcacactcactcagagcttcatgcagattctctctcctctttggaactaacctccattcg |
118 |
Q |
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| T |
31796796 |
gaatcaacaatccatatggagtggttattcaacaacgctctcacactcactcagagcttcatgcagattctctgtcctctttggaactaacctccattc- |
31796894 |
T |
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| Q |
119 |
taaaatcgtcattcccaa |
136 |
Q |
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| T |
31796895 |
taaaatcgtcactcccaa |
31796912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 31789762 - 31789883
Alignment:
| Q |
197 |
agattattcgtgttgagcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaa |
296 |
Q |
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| T |
31789762 |
agattatttgtttttagcagttgatattgtgtttcatatacagtcttgctgatccattgaagtactgtttgcaggttactgggtttccctctccgcctaa |
31789861 |
T |
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| Q |
297 |
gacgaaagtgtatgcatctggt |
318 |
Q |
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| T |
31789862 |
gacgaaagtgtatgcatctggt |
31789883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 31786007 - 31786057
Alignment:
| Q |
543 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
593 |
Q |
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| T |
31786007 |
tctacctagttttggccttgtatgagcaataatgcagtattctgatgatgt |
31786057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 31799810 - 31799879
Alignment:
| Q |
427 |
aagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcaga |
496 |
Q |
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|||||||||||||||||||||| ||||| | |||||||| |||| ||||||| || ||||||||||||| |
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| T |
31799810 |
aagtagttttgacatatcctttaaaatactatgggcatgttaattatgtatctgtgttagaagatgcaga |
31799879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
290 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
326 |
Q |
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| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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