View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6162_high_9 (Length: 220)

Name: NF6162_high_9
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6162_high_9
NF6162_high_9
[»] chr2 (10 HSPs)
chr2 (17-208)||(39144647-39144838)
chr2 (17-206)||(39493381-39493570)
chr2 (17-206)||(39425475-39425664)
chr2 (85-208)||(39188694-39188817)
chr2 (17-202)||(39604367-39604552)
chr2 (69-202)||(39099690-39099823)
chr2 (129-202)||(39503988-39504061)
chr2 (99-203)||(2362812-2362916)
chr2 (17-103)||(39126537-39126623)
chr2 (17-118)||(39380524-39380625)
[»] chr4 (1 HSPs)
chr4 (85-196)||(33152231-33152342)
[»] chr3 (1 HSPs)
chr3 (40-202)||(51576059-51576221)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 39144647 - 39144838
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144647 agaagcaatgaagctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 39144746  T
Q  117 gggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttggggcctt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39144747 gggctgggtccatctttcaatgaagatgatgttttaaagctttttggacttgtttctcagcacgacatagctgtagagctgtttggggcctt 39144838  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 39493570 - 39493381
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 116  Q
    ||||||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  39493570 agaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttat 39493471  T
Q  117 gggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttggggcc 206  Q
    || |||| |||||||||| |||| ||||| ||||||||||| || |||||||||||||||||| |||| | ||| |||||||||||||||    
T  39493470 ggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc 39493381  T

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Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 39425664 - 39425475
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 116  Q
    ||||||||||| | ||||||||||||||||||| || |||||||||||||  ||||||||||||||  |||| ||||||||||| |||||||||||||||    
T  39425664 agaagcaatgaagttagcacttgatttgaaagctaacataagtcaaaacaatgaaaattcagcggctgttcttggttttctacttcttctgtcaatttat 39425565  T
Q  117 gggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttggggcc 206  Q
    || |||| ||| |||||| | ||||| || ||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  39425564 ggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaacttagctgtagagctgtttggggcc 39425475  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 39188817 - 39188694
Alignment:
Q  85 ttctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacat 184  Q
    |||| ||||||||||||||||| |||||||||||  ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39188817 ttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttggacttgtttctcagtacgacat 39188718  T
Q  185 agctgtagagctgtttggggcctt 208  Q
    ||  |||||||| |||||||||||    
T  39188717 aggcgtagagctatttggggcctt 39188694  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 39604367 - 39604552
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 116  Q
    ||||||||||| |||||||||| |||||||| | || |||||| |||| || |||||||  | |||  |||| ||||||||||||||| |||||||||||    
T  39604367 agaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttat 39604466  T
Q  117 gggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttgg 202  Q
    ||  ||| ||| |||||| |||||||||| ||||||||||||||||   ||| | ||||| || | ||||||||||||||||||||    
T  39604467 ggattggctccttctttcgatgaagatgaagttttaaagcttttcgagtttgctgctcaggacaagatagctgtagagctgtttgg 39604552  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 39099690 - 39099823
Alignment:
Q  69 gaaaattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttg 168  Q
    |||||||| | |||| |||| |||||||||||||||||||||||||||    ||| ||| |||||  |||||||||| |||||||||||||| ||  |||    
T  39099690 gaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttg 39099789  T
Q  169 tttctcagcacgacatagctgtagagctgtttgg 202  Q
     | |||||||| | ||||||||| |||| |||||    
T  39099790 ctgctcagcacaagatagctgtaaagctctttgg 39099823  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 39504061 - 39503988
Alignment:
Q  129 tctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttgg 202  Q
    |||||| |||||||||| ||||| |||||||| ||  ||| | |||||||||| ||||||||||||||||||||    
T  39504061 tctttcgatgaagatgaagttttcaagctttttggttttgctgctcagcacgagatagctgtagagctgtttgg 39503988  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 2362812 - 2362916
Alignment:
Q  99 ctccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgt 198  Q
    ||||||||||||||||||||  ||| | | |||||| ||||||||||  ||||||||||||| ||  ||| | |||| ||| | ||| ||||||||||||    
T  2362812 ctccttctgtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgt 2362911  T
Q  199 ttggg 203  Q
    |||||    
T  2362912 ttggg 2362916  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 39126537 - 39126623
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactcct 103  Q
    ||||||||||| |||||| ||| | |||||| | || |||||| |||| ||   |||||||||||||||||| ||||||||||||||    
T  39126537 agaagcaatgaagctagctcttaaattgaaatctaacataagtgaaaaaacctgaaattcagcggcgattctgggttttctactcct 39126623  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 39380625 - 39380524
Alignment:
Q  17 agaagcaatgaggctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttat 116  Q
    ||||||| ||| |||||||||||||||||||||  | |||||  | || || ||| |||| | |||| |||| || |||||||| ||| |||||||||||    
T  39380625 agaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttat 39380526  T
Q  117 gg 118  Q
    ||    
T  39380525 gg 39380524  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 33152231 - 33152342
Alignment:
Q  85 ttctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagcttttcggacttgtttctcagcacgacat 184  Q
    |||| |||||||| || |||||||||||||||||| ||| | |||||||  |||||||||| |||||||||||||| ||| | ||| |||| ||| | ||    
T  33152231 ttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaagat 33152330  T
Q  185 agctgtagagct 196  Q
    ||| ||||||||    
T  33152331 agcggtagagct 33152342  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 51576059 - 51576221
Alignment:
Q  40 atttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatga 139  Q
    ||||||||||  | || ||| |||| || |||||||| | || | |||| |||| ||| ||||||||||||||||||||  ||| ||| | |||  || |    
T  51576059 atttgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataa 51576158  T
Q  140 agatgatgttttaaagcttttcggacttgtttctcagcacgacatagctgtagagctgtttgg 202  Q
    ||||||  |||| |||  ||| ||| ||||| |||||||| | ||||| ||||||||||||||    
T  51576159 agatgaaattttgaagtattttggatttgttgctcagcacaaaatagcagtagagctgtttgg 51576221  T

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