View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6162_low_3 (Length: 315)
Name: NF6162_low_3
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6162_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 49552655 - 49552950
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaatgcagttatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
100 |
Q |
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| T |
49552655 |
gtaacatctgctactagattaccgaaatgcagtcatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
49552754 |
T |
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| Q |
101 |
tcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552755 |
tcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
49552854 |
T |
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| Q |
201 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttac |
296 |
Q |
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| T |
49552855 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttac |
49552950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 49537536 - 49537629
Alignment:
| Q |
203 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttac |
296 |
Q |
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| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttac |
49537629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 49537361 - 49537541
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaa-tgcagttatgacaaatgtgtaggcc-atgggtacatcgttacctctacatgaaatatatgttggttcagcag |
98 |
Q |
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||||| ||||||| ||||||| |||| ||||||||||| |||||| ||| | | ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
49537361 |
gtaacttctgctagtagattactgaaactgcagttatgagaaatgtatagccagaagggtacatcaatacctctaaatgaaatatatgttggttcagcag |
49537460 |
T |
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| Q |
99 |
gttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaa-agtctgaacatt |
183 |
Q |
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|||| || || | ||||| |||| ||||| | ||||||| |||||||||||| |||||| ||| |||| |||||||||||| |
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| T |
49537461 |
attcaata-tcatataata----ctttccatttgctttcttgagttactttcacaattaaaaaactgatacaagagtctgaacatt |
49537541 |
T |
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