View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6162_low_4 (Length: 294)
Name: NF6162_low_4
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6162_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34359045 - 34358765
Alignment:
| Q |
1 |
caatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcttgtaccttatcttcttttaacaatgttatgtgatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34359045 |
caatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctg |
34358946 |
T |
|
| Q |
101 |
agaattctcaacaaacaacaacggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358945 |
agaattctcaacaaacaacaatggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccag |
34358846 |
T |
|
| Q |
201 |
gatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358845 |
gatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggt |
34358765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34353420 - 34353140
Alignment:
| Q |
1 |
caatcatggagtaatattaaaataaacaaacacaatcaaccatgatcttgtgcatttcgtgcttgtaccttatcttcttttaacaatgttatgtgatctg |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||| |
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| T |
34353420 |
caatcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctg |
34353321 |
T |
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| Q |
101 |
agaattctcaacaaacaacaacggcttcttcctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccag |
200 |
Q |
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|||||||||||||| | |||| || ||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
34353320 |
agaattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttcagctccaccag |
34353221 |
T |
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| Q |
201 |
gatcttttcgtcttccactgtttatgtcgaatcccaaactagcaacgatgttctcaatattgccgatgatattacacaggt |
281 |
Q |
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||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34353220 |
gatcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatgatctcaatattgccgatgatattacacaggt |
34353140 |
T |
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