View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6162_low_6 (Length: 274)
Name: NF6162_low_6
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6162_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 1140404 - 1140570
Alignment:
| Q |
30 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaatacatgtgaaagttagtttgagtcatccttgcaatcttcttctaaaaccagt |
129 |
Q |
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| T |
1140404 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaattcatgtgaaagttagtttgagtcatccttgcaatcttctcataaaatcagt |
1140503 |
T |
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| Q |
130 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtttagaaagaaagaaacagttat |
197 |
Q |
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| T |
1140504 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatag-ttataaagaaagaaacatttat |
1140570 |
T |
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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 44515056 - 44515136
Alignment:
| Q |
194 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttggggcccattgttcttaatgt |
274 |
Q |
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| T |
44515056 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttgggacccattgttcttaatgt |
44515136 |
T |
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