View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6162_low_8 (Length: 238)

Name: NF6162_low_8
Description: NF6162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6162_low_8
NF6162_low_8
[»] chr8 (11 HSPs)
chr8 (1-231)||(13588707-13588937)
chr8 (101-231)||(36566026-36566156)
chr8 (101-231)||(12492627-12492757)
chr8 (101-220)||(36544519-36544638)
chr8 (101-231)||(42854798-42854928)
chr8 (14-94)||(15216458-15216538)
chr8 (101-220)||(15216068-15216187)
chr8 (101-220)||(18849914-18850033)
chr8 (27-94)||(42855204-42855271)
chr8 (101-132)||(25984915-25984946)
chr8 (24-94)||(36544175-36544245)
[»] chr7 (20 HSPs)
chr7 (101-231)||(49028648-49028778)
chr7 (91-231)||(46356636-46356776)
chr7 (101-231)||(11593320-11593450)
chr7 (101-231)||(33350591-33350721)
chr7 (101-231)||(39907164-39907294)
chr7 (103-231)||(36651363-36651491)
chr7 (101-231)||(32629975-32630105)
chr7 (101-231)||(38896978-38897108)
chr7 (24-94)||(32629635-32629705)
chr7 (163-220)||(21520229-21520286)
chr7 (102-139)||(36870201-36870238)
chr7 (14-94)||(24178384-24178464)
chr7 (14-94)||(36651007-36651087)
chr7 (101-221)||(38606405-38606525)
chr7 (101-139)||(22346816-22346854)
chr7 (14-94)||(11592702-11592782)
chr7 (181-231)||(31004671-31004721)
chr7 (158-231)||(36870074-36870147)
chr7 (13-94)||(38896629-38896710)
chr7 (24-93)||(39907569-39907638)
[»] chr5 (15 HSPs)
chr5 (102-231)||(12493147-12493276)
chr5 (101-231)||(1274632-1274762)
chr5 (101-231)||(1288374-1288504)
chr5 (101-231)||(2076259-2076389)
chr5 (101-231)||(20318358-20318488)
chr5 (101-231)||(24177891-24178021)
chr5 (101-230)||(3394078-3394207)
chr5 (124-231)||(10638688-10638795)
chr5 (158-231)||(28977642-28977715)
chr5 (13-94)||(20318003-20318084)
chr5 (14-94)||(24177537-24177617)
chr5 (101-135)||(30418763-30418797)
chr5 (102-139)||(43558676-43558713)
chr5 (14-94)||(2076663-2076743)
chr5 (182-230)||(3301297-3301345)
[»] chr2 (16 HSPs)
chr2 (91-231)||(2609885-2610025)
chr2 (101-220)||(452412-452531)
chr2 (101-231)||(8180162-8180292)
chr2 (101-231)||(45368410-45368540)
chr2 (101-231)||(24584391-24584521)
chr2 (15-94)||(13148336-13148415)
chr2 (101-139)||(38453495-38453533)
chr2 (158-231)||(12475206-12475279)
chr2 (101-230)||(13148689-13148818)
chr2 (101-217)||(876521-876637)
chr2 (102-198)||(16292081-16292177)
chr2 (14-94)||(45368815-45368895)
chr2 (87-134)||(6465106-6465153)
chr2 (13-94)||(452805-452886)
chr2 (14-94)||(24584795-24584878)
chr2 (14-94)||(8179806-8179886)
[»] chr1 (15 HSPs)
chr1 (101-221)||(37463657-37463777)
chr1 (101-231)||(43241166-43241296)
chr1 (101-231)||(49348179-49348309)
chr1 (101-231)||(51441549-51441679)
chr1 (101-231)||(8671288-8671417)
chr1 (24-94)||(29173718-29173788)
chr1 (14-94)||(11681834-11681914)
chr1 (100-221)||(46227099-46227220)
chr1 (158-231)||(51601482-51601555)
chr1 (14-94)||(43241570-43241650)
chr1 (14-87)||(8670931-8671004)
chr1 (100-137)||(35829272-35829309)
chr1 (14-94)||(51441953-51442033)
chr1 (25-88)||(32405655-32405718)
chr1 (30-83)||(45833591-45833644)
[»] chr4 (18 HSPs)
chr4 (101-231)||(1777800-1777930)
chr4 (101-221)||(435599-435719)
chr4 (101-221)||(23907097-23907217)
chr4 (102-231)||(1212092-1212221)
chr4 (101-231)||(39707829-39707959)
chr4 (14-94)||(27451362-27451442)
chr4 (101-231)||(27450958-27451088)
chr4 (101-231)||(48623312-48623442)
chr4 (14-94)||(23907491-23907571)
chr4 (24-90)||(39707487-39707554)
chr4 (101-139)||(53703977-53704015)
chr4 (100-221)||(10776214-10776335)
chr4 (102-134)||(55769265-55769297)
chr4 (102-134)||(55833521-55833553)
chr4 (177-231)||(53707237-53707291)
chr4 (14-87)||(48623723-48623796)
chr4 (182-231)||(56374738-56374787)
chr4 (177-221)||(16002357-16002401)
[»] chr3 (12 HSPs)
chr3 (101-231)||(51448494-51448624)
chr3 (101-220)||(52138195-52138314)
chr3 (14-94)||(38849115-38849195)
chr3 (14-94)||(51448898-51448978)
chr3 (179-230)||(19736611-19736662)
chr3 (179-230)||(19757429-19757480)
chr3 (102-214)||(9258254-9258366)
chr3 (24-94)||(3368786-3368856)
chr3 (102-136)||(27916939-27916973)
chr3 (182-231)||(25190827-25190876)
chr3 (101-137)||(38849461-38849497)
chr3 (14-62)||(52137841-52137889)
[»] scaffold0286 (1 HSPs)
scaffold0286 (91-212)||(305-426)
[»] chr6 (12 HSPs)
chr6 (91-212)||(2208206-2208327)
chr6 (101-231)||(6082767-6082897)
chr6 (104-230)||(5258936-5259063)
chr6 (102-231)||(20428422-20428551)
chr6 (13-94)||(30669907-30669988)
chr6 (14-94)||(5260437-5260517)
chr6 (14-94)||(20428826-20428906)
chr6 (101-220)||(9706142-9706261)
chr6 (100-172)||(3629596-3629668)
chr6 (100-219)||(27790522-27790641)
chr6 (101-139)||(30670255-30670293)
chr6 (14-94)||(6082402-6082482)
[»] scaffold0018 (1 HSPs)
scaffold0018 (101-231)||(30835-30965)
[»] scaffold0113 (2 HSPs)
scaffold0113 (1-85)||(13456-13540)
scaffold0113 (101-139)||(13133-13171)
[»] scaffold0606 (1 HSPs)
scaffold0606 (100-132)||(9034-9066)
[»] scaffold0045 (1 HSPs)
scaffold0045 (101-139)||(88811-88849)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13588707 - 13588937
Alignment:
Q  1 acaaaactatgtaaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagactaccagc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13588707 acaaaactgtgtaaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagactaccagc 13588806  T
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13588807 gattttcccataacaataggattgcaccaagggtcaaccataatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 13588906  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||||||||||||||||||||||||||||||    
T  13588907 caccaagatgtatgctttttggtgatgatgt 13588937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 36566156 - 36566026
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  36566156 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 36566057  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  36566056 caccgagatgtatgctttttgcagatgatgt 36566026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 12492757 - 12492627
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||| |||||||||||||||||||||||||||||| | |||    ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  12492757 gatttttccataacaataggattgcaccaagggtcaatcttaagttcttatctttttactttagttttggatgtattgacggaacacatccaagagttag 12492658  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  12492657 caccgagatgtatgctttttgcagatgatgt 12492627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 36544519 - 36544638
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||    ||| | ||  |||| |||||||||| | || | | |||| ||||||||||| |    
T  36544519 gattttcccataacaataggattgcaccaagggtcaaccctaagttcttatctttttactttagttttggatgtattgatgcaacacatccaagagttag 36544618  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||  |||||||||||||||    
T  36544619 cactgagatgtatgcttttt 36544638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 42854928 - 42854798
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||| |||||||||||| ||||||||||||||||| |||  | ||| | ||  |||| |||||||||| |  | |  ||||| ||||||||||| |    
T  42854928 gattttcctataacaataggactgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtcctgatagaacacatccaagagttag 42854829  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  42854828 caccgagatgtatgctttttgcagatgatgt 42854798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 15216538 - 15216458
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| | |||| | | |||||||||| ||||||||||||||||    
T  15216538 aattataggggaattaagctaatgagtcataccatgaagttatgcgaaagggtaattgagcgaagactaagaaaagagact 15216458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 15216187 - 15216068
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||| |||||||||| |||||| |||  | ||| | ||  |||| |||||||||| |  | || ||||| ||||||||||| |    
T  15216187 gattttcccataacaataggactgcaccaaggatcaaccctaagtccttatctttttactttagttttggatgtactgacagaacacatccaagagttag 15216088  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||| ||||||||| |||||    
T  15216087 caccgagatgtatgtttttt 15216068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 18850033 - 18849914
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||| |||||| |||||||||||||||| |||||||| |||| | ||| | ||  | || |||||| ||||| ||||||||||| | |||| | || |    
T  18850033 gatttttccataataataggattgcaccaacggtcaaccttaattctttatctttttattttagttttagatatatttacggaacacacccaacaattag 18849934  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||||||||||||| |||||    
T  18849933 caccaagatgtatgtttttt 18849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 42855271 - 42855204
Alignment:
Q  27 ttaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||| ||||||||||||||||| |||||| |||||| ||  |||||||||| ||||||||||||||||    
T  42855271 ttaagctaatgagtcataccatgaagttatgggaaaggaaaattgagcgaagactaagaaaagagact 42855204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 25984915 - 25984946
Alignment:
Q  101 gattttcccataacaataggattgcaccaagg 132  Q
    ||||||||||||||||||||||||||||||||    
T  25984915 gattttcccataacaataggattgcaccaagg 25984946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 36544175 - 36544245
Alignment:
Q  24 gaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  36544175 gaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 36544245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 49028648 - 49028778
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  49028648 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 49028747  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||||||||||||||||||||  ||||||||    
T  49028748 caccaagatgtatgctttttgcagatgatgt 49028778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 46356776 - 46356636
Alignment:
Q  91 gactaccagcgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatc 190  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| |||    
T  46356776 gactaccaaagattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatc 46356677  T
Q  191 caagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||||||| ||||| ||||||||||||||||  ||||||||    
T  46356676 caagagttagcaccgagatgtatgctttttgcagatgatgt 46356636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 11593320 - 11593450
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  11593320 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 11593419  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  11593420 caccgagatgtatgctttttgcagatgatgt 11593450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 33350721 - 33350591
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  33350721 gattttcccataacaataggattgcaccaagggtcaaccctaactccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 33350622  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  33350621 caccgagatgtatgctttttgcagatgatgt 33350591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 39907294 - 39907164
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  39907294 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatcttttcactttagttttggatgtattgacggaacacatccaagagttag 39907195  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  39907194 caccgagatgtatgctttttgcagatgatgt 39907164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 36651363 - 36651491
Alignment:
Q  103 ttttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgca 202  Q
    ||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||| ||| | || |||||||| ||||||||||| |||    
T  36651363 ttttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttagatgtattgacggaacacatccaagagttagca 36651462  T
Q  203 ccaagatgtatgctttttggtgatgatgt 231  Q
    || ||||||||||||||||  ||||||||    
T  36651463 ccgagatgtatgctttttgcagatgatgt 36651491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 32629975 - 32630105
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||| ||||||||||||||||| |||  | ||| | ||  |||  |||||||||| |  | |||||||| ||||||||||| |    
T  32629975 gattttcccataacaataggactgcaccaagggtcaaccctaagtccttatctttttactctagttttggatgtactaacggaacacatccaagagttag 32630074  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  32630075 caccgagatgtatgctttttgcagatgatgt 32630105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 38896978 - 38897108
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||   ||| |||||||||| | || |||||||| ||||||||||| |    
T  38896978 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttgctttagttttggatgtattgacggaacacatccaagagttag 38897077  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| |||||||| | |||||  ||||||||    
T  38897078 caccgagatgtattcattttgcagatgatgt 38897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 32629635 - 32629705
Alignment:
Q  24 gaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| ||||||||||||||||| |||||| |||||| | | ||||| |||| ||||||||||||||||    
T  32629635 gaattaagctaatgagtcataccatgaagttatgggaaagggtaattgaacgaagactaagaaaagagact 32629705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 21520286 - 21520229
Alignment:
Q  163 agttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgcttttt 220  Q
    |||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  21520286 agttttggatgtatttacggaacacatccaagagttagcaccgagatgtatgcttttt 21520229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 36870238 - 36870201
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaacc 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36870238 attttcccataacaataggattgcaccaagggtcaacc 36870201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 24178464 - 24178384
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||| | ||||||||||||||||| |||||| |||||| | ||||| | |||| ||||||||||||||||    
T  24178464 aattataggggaatttagctaatgagtcataccatgaagttatgggaaagggtgattcaacgaagactaagaaaagagact 24178384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 36651007 - 36651087
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||||||  ||| ||||||||| ||||||    
T  36651007 aattataggagaattaagctaatgagtcataccatgaagttatgggaaagggtgattgaaagaagactaagaaaggagact 36651087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 38606405 - 38606525
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||| | |||||||||||| ||||||||||||||||| | |  | ||| | ||   ||| |||||||||| |  | || ||||| ||||||||||| |    
T  38606405 gatttttcgataacaataggactgcaccaagggtcaacccttagtccttatctttttgctttagttttggatgtactgacagaacacatccaagagttag 38606504  T
Q  201 caccaagatgtatgctttttg 221  Q
    |||||||||||||||||||||    
T  38606505 caccaagatgtatgctttttg 38606525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 22346816 - 22346854
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  22346816 gattttcccataacaataggattgcaccatgggtcaacc 22346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 11592702 - 11592782
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  11592702 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 11592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 31004671 - 31004721
Alignment:
Q  181 ggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  31004671 ggaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 31004721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 36870147 - 36870074
Alignment:
Q  158 acttcagttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||| |||||||||| |  | |||||||| ||||||||| | ||||| ||||||||||||||||  ||||||||    
T  36870147 actttagttttggatgtactgacggaacacatccaagagctagcaccgagatgtatgctttttgcagatgatgt 36870074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 38896629 - 38896710
Alignment:
Q  13 aaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||||| | ||||||| ||||||||||||||||| |||||| || ||| | |||| ||  ||| ||||||||| ||||||    
T  38896629 aaattataggggaattaagctaatgagtcataccatgaagttatggaaaagggtgatcgaaagaagactaagaaaggagact 38896710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 39907638 - 39907569
Alignment:
Q  24 gaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagac 93  Q
    ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| |||||    
T  39907638 gaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagac 39907569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 12493276 - 12493147
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgc 201  Q
    |||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| ||    
T  12493276 attttcccataacaataggattgcaccaagggtcaaccctaactccttatctttttactttagttttggatgtattgacggaacacatccaagagttagc 12493177  T
Q  202 accaagatgtatgctttttggtgatgatgt 231  Q
    ||||||||||||||||||||  ||||||||    
T  12493176 accaagatgtatgctttttgcagatgatgt 12493147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 1274632 - 1274762
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||| ||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  1274632 gattttcccataacaatagaattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 1274731  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  1274732 caccgagatgtatgctttttgcagatgatgt 1274762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 1288504 - 1288374
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | |||   ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  1288504 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatatttttactttagttttggatgtattgacggaacacatccaagagttag 1288405  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  1288404 caccgagatgtatgctttttgcagatgatgt 1288374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 2076389 - 2076259
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||| |||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  2076389 gattttcccacaacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 2076290  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  2076289 caccgagatgtatgctttttgcagatgatgt 2076259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 20318358 - 20318488
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || ||| |||| || |||||||| |    
T  20318358 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacgaaacacattcaagagttag 20318457  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  20318458 caccgagatgtatgctttttgcagatgatgt 20318488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 24177891 - 24178021
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||| |||||||||||||||||||||||||||||| |||  | | | | ||  |||| ||||| |||| | || |||||||| ||||||||||| |    
T  24177891 gattttccgataacaataggattgcaccaagggtcaaccctaagtcctaatctttttactttagtttgggatgtattgacggaacacatccaagagttag 24177990  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  24177991 caccgagatgtatgctttttgcagatgatgt 24178021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 3394078 - 3394207
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||||||||||||||||||||||||||| |||| |||  | ||| |  |  |||  |||||||||| |  | |||||||| ||||||||||| |    
T  3394078 gattttcccataacaataggattgcaccaagggtaaaccctaagtccttatctctttactctagttttggatgtactgacggaacacatccaagagttag 3394177  T
Q  201 caccaagatgtatgctttttggtgatgatg 230  Q
    |||| ||||||||||||||||  |||||||    
T  3394178 caccgagatgtatgctttttgcagatgatg 3394207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 10638688 - 10638795
Alignment:
Q  124 gcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgctttttggt 223  Q
    |||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| ||||| ||||||||||||||||      
T  10638688 gcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttttgca 10638787  T
Q  224 gatgatgt 231  Q
    ||||||||    
T  10638788 gatgatgt 10638795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 28977715 - 28977642
Alignment:
Q  158 acttcagttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||| |||||||||| | || |||||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  28977715 actttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 28977642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 20318003 - 20318084
Alignment:
Q  13 aaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| || ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  20318003 aaattattagggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 20318084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 24177537 - 24177617
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  24177537 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 24177617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 30418763 - 30418797
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtc 135  Q
    ||||||||||||||||||||| |||||||||||||    
T  30418763 gattttcccataacaataggactgcaccaagggtc 30418797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 43558713 - 43558676
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaacc 139  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  43558713 attttccaataacaataggattgcactaagggtcaacc 43558676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 2076743 - 2076663
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| |||| |||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  2076743 aattataggggaattaagctaacgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 2076663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 3301297 - 3301345
Alignment:
Q  182 gaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatg 230  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||    
T  3301297 gaacacatccaagagttagcaccgagatgtatgctttttgcagatgatg 3301345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 2609885 - 2610025
Alignment:
Q  91 gactaccagcgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatc 190  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| |||    
T  2609885 gactaccaaagattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatc 2609984  T
Q  191 caagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||||||| ||||| ||||||||||||||||  ||||||||    
T  2609985 caagagttagcaccgagatgtatgctttttgcagatgatgt 2610025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 452531 - 452412
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  452531 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 452432  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||| |||||||||||||||    
T  452431 caccgagatgtatgcttttt 452412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 8180162 - 8180292
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||| ||||||||||||| |||  | ||| | ||  |||| |||||||||| | || ||| |||| ||||||||||| |    
T  8180162 gattttcccataacaataggattgcgccaagggtcaaccataagtccttatctttttactttagttttggatgtattgacgaaacacatccaagagttag 8180261  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  8180262 caccgagatgtatgctttttgcagatgatgt 8180292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 45368540 - 45368410
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||| ||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| |||||||| || |    
T  45368540 gattttcccataacaataggactgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagaattag 45368441  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  45368440 caccgagatgtatgctttttgcagatgatgt 45368410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 24584521 - 24584391
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| |  | |||||||| |||||||||||      
T  24584521 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtactaacggaacacatccaagagttat 24584422  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||| ||||||  ||||||||    
T  24584421 caccgagatgtatgttttttgcagatgatgt 24584391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 13148336 - 13148415
Alignment:
Q  15 attataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||| | |||||||||||||||||| |||||| |||||| |||||| | |||||||  ||| ||||||||||||||||    
T  13148336 attataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagact 13148415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 38453533 - 38453495
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38453533 gattttcccataacaataggattgcaccaagggtcaacc 38453495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 12475279 - 12475206
Alignment:
Q  158 acttcagttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||| |||||||||| | || |||||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  12475279 actttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 12475206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 13148689 - 13148818
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||| | |||||||||| |||||||||| |||| ||||||| || ||||  ||  |||| |||||||||| |  |||| ||||| ||||||||| | |    
T  13148689 gatttttcgataacaatagaattgcaccaaaggtctaccgtaaacccttacttttttactttagttttggatgtacttacagaacacatccaagagctag 13148788  T
Q  201 caccaagatgtatgctttttggtgatgatg 230  Q
    ||| ||||||||||| |||||  |||||||    
T  13148789 cactaagatgtatgcattttgtagatgatg 13148818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 876521 - 876637
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||||||||| ||||||||||||||| |||||  ||| || ||| | ||  || |  ||||||||| |  |||||||||| |||||||||   |    
T  876521 gattttcccataacaacaggattgcaccaaggttcaacactaagcccttatcttttcaccttcgttttggatgtacttacggaacacatccaagagcgag 876620  T
Q  201 caccaagatgtatgctt 217  Q
    |||||||||||||||||    
T  876621 caccaagatgtatgctt 876637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 16292081 - 16292177
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtt 198  Q
    |||||||||||||| |||||||||| |||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| |||||||||||    
T  16292081 attttcccataacattaggattgcatcaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagtt 16292177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 45368895 - 45368815
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| || ||| |||||| | | ||||| |||| ||||||||||||||||    
T  45368895 aattataggggaattaagctaatgagtcataccatgaaattatgggaaagggtaattgaacgaagactaagaaaagagact 45368815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 6465106 - 6465153
Alignment:
Q  87 aagagactaccagcgattttcccataacaataggattgcaccaagggt 134  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||||||    
T  6465106 aagagaccaccgacgatttccccataacaataggattgcaccaagggt 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 452886 - 452805
Alignment:
Q  13 aaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||||| | ||||||| ||||||||||||||||| |||||| | |||| | |||| ||  ||| ||||||||| ||||||    
T  452886 aaattataggggaattaagctaatgagtcataccatgaagttacgagaaagggtgatcgaaagaagactaagaaaggagact 452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 24584878 - 24584795
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaa---tgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| ||||||   |||| ||||| | || ||||||||| ||||||    
T  24584878 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgattattgaacaaagactaagaaaggagact 24584795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 8179806 - 8179886
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||| ||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  8179806 aattataggggaattaagctaataagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 8179886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 37463777 - 37463657
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||| || ||||| ||  |||| |||||||||| |  |||||||||| ||||||||||| |    
T  37463777 gattttcctataacaataggattgcaccaagggtcaaccctaagcccttacctttttactttagttttggatgttcttacggaacacatccaagagttag 37463678  T
Q  201 caccaagatgtatgctttttg 221  Q
    |||| ||||||||||||||||    
T  37463677 caccgagatgtatgctttttg 37463657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 43241296 - 43241166
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  43241296 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 43241197  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  43241196 caccgagatgtatgctttttgcagatgatgt 43241166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 49348309 - 49348179
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||||||||||||||||||||||||||||| || |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  49348309 gattttcccataacaataggattgcaccaagggtcagccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 49348210  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  49348209 caccgagatgtatgctttttgtagatgatgt 49348179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 51441679 - 51441549
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||   ||| |||||||||| | || |||||||| ||||||||||| |    
T  51441679 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatcttttttctttagttttggatgtattgacggaacacatccaagagttag 51441580  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  51441579 caccgagatgtatgctttttgcagatgatgt 51441549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 8671288 - 8671417
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||| |||||||| |||||||||| |||  | ||| | ||  |||| ||||||| || | || |||||||| ||||||||||| |    
T  8671288 gattttcccataacaatagaattgcacctagggtcaaccctaagtccttatctttttactttagttttg-atgtattgacggaacacatccaagagttag 8671386  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  8671387 caccgagatgtatgctttttgcagatgatgt 8671417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 29173788 - 29173718
Alignment:
Q  24 gaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||||||||||||||| ||| || |||||| | |||| ||||||||| |||||||||||||||||||||    
T  29173788 gaattaaactaatgagtcgtacaatcaagttatgcgaaaggatgattgaacgaaaactaagaaaagagact 29173718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 11681834 - 11681914
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| |||| |||||||||||| || ||| |||||| | |||||||||||| ||||||||||||||||    
T  11681834 aattataggggaattaagctaaagagtcataccatcaaattatgggaaagggtgattgagcgaagactaagaaaagagact 11681914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 46227220 - 46227099
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagttt 199  Q
    ||||||||  |||| |||||  ||||||||||| |||||| ||| || ||||| ||  |||| |||||||||| |  ||||| ||||  ||||||||||     
T  46227220 cgattttcttataataatagagttgcaccaaggatcaaccctaagcccttacctttttactttagttttggatgtacttacgaaacacgtccaagagtta 46227121  T
Q  200 gcaccaagatgtatgctttttg 221  Q
    |||||||||||||||| |||||    
T  46227120 gcaccaagatgtatgccttttg 46227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 51601482 - 51601555
Alignment:
Q  158 acttcagttttggatatgtttacggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||| |||||||||| | || |||||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  51601482 actttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 51601555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 43241650 - 43241570
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||||| ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  43241650 aattataagggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 43241570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8670931 - 8671004
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaa 87  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  |||||||||||||    
T  8670931 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatggaaagaaaactaagaaa 8671004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 35829309 - 35829272
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagggtcaa 137  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35829309 cgattttcccataacaataggattgcaccaaggatcaa 35829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 51442033 - 51441953
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  51442033 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 51441953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 32405718 - 32405655
Alignment:
Q  25 aattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaa 88  Q
    |||||| || |||||||||||||| |||||| |||||| | |||||||||| | ||||||||||    
T  32405718 aattaaccttatgagtcataccatgaagttatgggaaaaggtgattgagcggagactaagaaaa 32405655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 45833591 - 45833644
Alignment:
Q  30 aactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaa 83  Q
    |||||| ||||||| |||| |||||| | ||||||||||||||||||| |||||    
T  45833591 aactaacgagtcatgccatgaagttatgagaaatgatgattgagcgaagactaa 45833644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 1777930 - 1777800
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | || ||||| |||||||||| | || |||||||| ||||||||||| |    
T  1777930 gattttcccataacaataggattgcaccaagggtcaaccctaaatccttatcttttaactttagttttggatgtattgacggaacacatccaagagttag 1777831  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||| ||  ||||||||    
T  1777830 caccgagatgtatgctttatgcagatgatgt 1777800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 435599 - 435719
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||| ||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  435599 gattttcccataacaataggagtgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 435698  T
Q  201 caccaagatgtatgctttttg 221  Q
    |||| ||||||||||||||||    
T  435699 caccgagatgtatgctttttg 435719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 23907217 - 23907097
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| | ||||||||| |    
T  23907217 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacaaccaagagttag 23907118  T
Q  201 caccaagatgtatgctttttg 221  Q
    |||| ||||||||||||||||    
T  23907117 caccgagatgtatgctttttg 23907097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 1212221 - 1212092
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgc 201  Q
    ||||||||||||||||||||||||||||||| |||||| |||  | ||| | ||  |||| |||||||||| |  ||||  |||| ||| ||||||| ||    
T  1212221 attttcccataacaataggattgcaccaaggttcaaccctaagtccttatcttttcactttagttttggatgtacttacataacacatctaagagttagc 1212122  T
Q  202 accaagatgtatgctttttggtgatgatgt 231  Q
    ||| ||||||||||||||||| ||||||||    
T  1212121 accgagatgtatgctttttggagatgatgt 1212092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 39707829 - 39707959
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||| |||||| |||| |||  | ||| | ||  |||| |||||||||| |  |||| ||||| |||||||||||||    
T  39707829 gattttcccataacaataggattgcactaagggttaaccctaagtccttatctttttactttagttttggatgtacttacagaacacatccaagagtttg 39707928  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| | ||||||| ||||||  ||||||||    
T  39707929 caccgatatgtatgttttttgcagatgatgt 39707959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 27451442 - 27451362
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | | |||||||||| ||||||||||||||||    
T  27451442 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtaattgagcgaagactaagaaaagagact 27451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 27451088 - 27450958
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||| | ||||||||||||||||| |||  | ||  | ||  |||| |||||||||| |  | ||| |||| |||||||||||      
T  27451088 gattttcccataacaatagaactgcaccaagggtcaaccctaagtccttctctttttactttagttttggatgtactaacgaaacacatccaagagttaa 27450989  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  27450988 caccgagatgtatgctttttgccgatgatgt 27450958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 48623442 - 48623312
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||| | || ||||||||||||||||||| |||||| |||    ||| | ||  |||| |||||||||| | || ||| |||| ||||||||||| |    
T  48623442 gattttctcttatcaataggattgcaccaaggttcaaccctaagttcttatctttttactttagttttggatgtattgacgtaacacatccaagagttag 48623343  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  48623342 caccgagatgtatgctttttgcagatgatgt 48623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 23907571 - 23907491
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  23907571 aattataggggaattaagctaatgagtcataccataaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 23907491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 39707487 - 39707554
Alignment:
Q  24 gaattaaactaatgagtcataccataaagtta-agggaaatgatgattgagcgaaaactaagaaaaga 90  Q
    ||||||||||||||||||||||||| |||||| ||| ||| | ||||||| |||| ||||||||||||    
T  39707487 gaattaaactaatgagtcataccatgaagttataggaaaaaggtgattgaacgaagactaagaaaaga 39707554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 53703977 - 53704015
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  53703977 gattttcccgtaacaataggattgcaccaagggtcaacc 53704015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 10776335 - 10776214
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagttt 199  Q
    |||||||||||| |||||||||||||||||||| |||||   || || ||| | ||  | || |||||||||| |  |||||||||| || ||||||       
T  10776335 cgattttcccatgacaataggattgcaccaaggttcaacaccaagcccttatcttttcattttagttttggatgtacttacggaacacattcaagagcgg 10776236  T
Q  200 gcaccaagatgtatgctttttg 221  Q
     |||||||||||||||||||||    
T  10776235 acaccaagatgtatgctttttg 10776214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 55769297 - 55769265
Alignment:
Q  102 attttcccataacaataggattgcaccaagggt 134  Q
    |||||||||||||||||||||||||||||||||    
T  55769297 attttcccataacaataggattgcaccaagggt 55769265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 55833553 - 55833521
Alignment:
Q  102 attttcccataacaataggattgcaccaagggt 134  Q
    |||||||||||||||||||||||||||||||||    
T  55833553 attttcccataacaataggattgcaccaagggt 55833521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 53707237 - 53707291
Alignment:
Q  177 ttacggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  53707237 ttacagaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 53707291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 48623796 - 48623723
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaa 87  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| |||||||||    
T  48623796 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaa 48623723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 56374738 - 56374787
Alignment:
Q  182 gaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  56374738 gaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 56374787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 16002357 - 16002401
Alignment:
Q  177 ttacggaacatatccaagagtttgcaccaagatgtatgctttttg 221  Q
    |||||||||| ||||||||||| ||||| ||||||||| ||||||    
T  16002357 ttacggaacacatccaagagttagcaccgagatgtatgttttttg 16002401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 51448624 - 51448494
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  51448624 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 51448525  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    || | ||||||||||||||||  ||||||||    
T  51448524 catcgagatgtatgctttttgcagatgatgt 51448494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 52138195 - 52138314
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||||||||||||||| |||||||||||| |||||| |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  52138195 gattttcccataacaatagaattgcaccaaggatcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 52138294  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||| |||||||||||||||    
T  52138295 caccgagatgtatgcttttt 52138314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 38849115 - 38849195
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||||||   ||||||| ||||  |||||||||||||||    
T  38849115 aattataagggaattaaactaatgagtcataccatgaagttatgggaaagagtgattgaacgaaggctaagaaaagagact 38849195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 51448978 - 51448898
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  51448978 aattataggggaattaagctaatgagtcataccataaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 51448898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 19736611 - 19736662
Alignment:
Q  179 acggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatg 230  Q
    |||||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  19736611 acggaacacatccaagagttagcaccaagatgtatgctttttgcagatgatg 19736662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 19757429 - 19757480
Alignment:
Q  179 acggaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatg 230  Q
    |||||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  19757429 acggaacacatccaagagttagcaccaagatgtatgctttttgcagatgatg 19757480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 9258254 - 9258366
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgc 201  Q
    ||||||||| ||||||||||| ||||||| || |||||  ||  | ||| | ||  |||| |||||||||| |  |||||||||| ||||||||||| ||    
T  9258254 attttcccacaacaataggatggcaccaatggacaaccccaagtccttatctttttactttagttttggatgtacttacggaacacatccaagagttagc 9258353  T
Q  202 accaagatgtatg 214  Q
    ||| |||||||||    
T  9258354 accgagatgtatg 9258366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 3368786 - 3368856
Alignment:
Q  24 gaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||||||| || | ||||||||| |||||| ||||||   ||||||| |||| ||||||||||||||||    
T  3368786 gaattaaacttataattcataccatgaagttatgggaaaatgtgattgaacgaagactaagaaaagagact 3368856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 27916939 - 27916973
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtca 136  Q
    |||| ||||||||||||||||||||||||||||||    
T  27916939 atttccccataacaataggattgcaccaagggtca 27916973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 25190827 - 25190876
Alignment:
Q  182 gaacatatccaagagtttgcaccaagatgtatgctttttggtgatgatgt 231  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  ||||||||    
T  25190827 gaacacatccaagagttagcaccgagatgtatgctttttgcagatgatgt 25190876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 38849461 - 38849497
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaa 137  Q
    |||||| |||||||| |||||||||||||||||||||    
T  38849461 gatttttccataacagtaggattgcaccaagggtcaa 38849497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 52137841 - 52137889
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaa 62  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| ||||||    
T  52137841 aattataggggaattaagctaatgagtcataccatgaagttatgggaaa 52137889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 426 - 305
Alignment:
Q  91 gactaccagcgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatc 190  Q
    |||||||| ||||||| ||||| ||||| |||||||||||||||||| | ||| || ||||| ||  |||| |||||||||| |  |||||||||| |||    
T  426 gactaccaacgatttttccatatcaatatgattgcaccaagggtcaatcctaagcccttacctttttactttagttttggatgtacttacggaacacatc 327  T
Q  191 caagagtttgcaccaagatgta 212  Q
    |||||||| |||||||||||||    
T  326 caagagttagcaccaagatgta 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 2208327 - 2208206
Alignment:
Q  91 gactaccagcgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatc 190  Q
    |||||||| ||||||| ||||| ||||| |||||||||||||||||| | ||| || ||||| ||  |||| |||||||||| |  |||||||||| |||    
T  2208327 gactaccaacgatttttccatatcaatatgattgcaccaagggtcaatcctaagcccttacctttttactttagttttggatgtacttacggaacacatc 2208228  T
Q  191 caagagtttgcaccaagatgta 212  Q
    |||||||| |||||||||||||    
T  2208227 caagagttagcaccaagatgta 2208206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 6082767 - 6082897
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    ||||||| | ||||||||||||||||||||||||||||| |||    ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  6082767 gattttctcgtaacaataggattgcaccaagggtcaaccctaagttcttatctttttactttagttttggatgtattgacggaacacatccaagagttag 6082866  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  6082867 caccgagatgtatgctttttgcagatgatgt 6082897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 5259063 - 5258936
Alignment:
Q  104 tttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaa-acttcagttttggatatgtttacggaacatatccaagagtttgca 202  Q
    ||||||||||||||||||||||||||||||| |||| |||  | ||| | ||   |||| |||||||||| |  | |||||||| ||||||||||| |||    
T  5259063 tttcccataacaataggattgcaccaagggtaaaccctaagtccttatcttttttactttagttttggatgtactgacggaacacatccaagagttagca 5258964  T
Q  203 ccaagatgtatgctttttggtgatgatg 230  Q
    || ||||||||||||||||  |||||||    
T  5258963 ccgagatgtatgctttttgcagatgatg 5258936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 20428551 - 20428422
Alignment:
Q  102 attttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttgc 201  Q
    |||||||||||||||||||| ||||||||||||||||| |||    ||| | |   |||| || ||||||| |  |||||||||| || |||||||| ||    
T  20428551 attttcccataacaataggactgcaccaagggtcaaccctaagtttttatcttattactttagctttggatgtacttacggaacacattcaagagttagc 20428452  T
Q  202 accaagatgtatgctttttggtgatgatgt 231  Q
    ||| ||||||||||||||||  ||||||||    
T  20428451 accgagatgtatgctttttgcagatgatgt 20428422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 30669907 - 30669988
Alignment:
Q  13 aaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    |||||||| | ||||||| ||||||||||||||||| |||||| || ||| ||||||||| |||| ||||||||| ||||||    
T  30669907 aaattataggggaattaagctaatgagtcataccatgaagttatggcaaaggatgattgaacgaagactaagaaatgagact 30669988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 5260517 - 5260437
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | | |||||||||| ||| ||||||||||||    
T  5260517 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtaattgagcgaagacttagaaaagagact 5260437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 20428906 - 20428826
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||||| ||||||| ||||||||||||||||| |||||| |||||| | | ||||| |||| |||||||| |||||||    
T  20428906 aattataagggaattaagctaatgagtcataccatgaagttatgggaaagggtaattgaacgaagactaagaacagagact 20428826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 9706142 - 9706261
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||||||||||| || ||||||||||||||||| |||  | ||| | ||  |||| |||||||||| |  | ||| |||| ||||||||||| |    
T  9706142 gattttcccataacaatatgactgcaccaagggtcaaccttaagtccttatctttttactttagttttggatgtactgacgaaacacatccaagagttag 9706241  T
Q  201 caccaagatgtatgcttttt 220  Q
    |||| || ||||||||||||    
T  9706242 caccgagttgtatgcttttt 9706261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 3629596 - 3629668
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggat 172  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| || ||| | ||  |||| ||||||||||    
T  3629596 cgattttcccataacaataggattgcactaagggtcaaccttaagcccttatctttttactttagttttggat 3629668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 27790522 - 27790641
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagttt 199  Q
    ||||||||||||||||| ||||||  |||||||||||||| ||| || ||||| ||  |||| ||||||| ||    ||| | |||| |||||| ||||     
T  27790522 cgattttcccataacaaaaggattataccaagggtcaaccctaaacccttacctttttactttagttttgaatgcacttatgaaacacatccaaaagtta 27790621  T
Q  200 gcaccaagatgtatgctttt 219  Q
    ||| ||||||||||||||||    
T  27790622 gcatcaagatgtatgctttt 27790641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 30670255 - 30670293
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  30670255 gattttcccataacaataagattgcaccaagggtcaacc 30670293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 6082402 - 6082482
Alignment:
Q  14 aattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 94  Q
    ||||||| | ||||||| ||||||||||||||||| |||||| |||||| | |||| ||  ||| ||||||||| ||||||    
T  6082402 aattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagact 6082482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 30835 - 30965
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaaccgtaatccattacccttaaacttcagttttggatatgtttacggaacatatccaagagtttg 200  Q
    |||||||||| |||||||||| ||||||||||||||| | |||  | ||| | ||  |||| |||||||||| | || |||||||| ||||||||||| |    
T  30835 gattttcccaaaacaataggactgcaccaagggtcaatcctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 30934  T
Q  201 caccaagatgtatgctttttggtgatgatgt 231  Q
    |||| ||||||||||||||||  ||||||||    
T  30935 caccgagatgtatgctttttgcagatgatgt 30965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13540 - 13456
Alignment:
Q  1 acaaaactatgtaaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaaga 85  Q
    ||||||||| |  ||||||| | ||||||| ||||||||||||||||| |||||| |||||||| ||||||| |||| |||||||    
T  13540 acaaaactacgcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaatggtgattgaacgaagactaaga 13456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 13171 - 13133
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13171 gattttcccataacaataggattgcaccaagggtcaacc 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 9034 - 9066
Alignment:
Q  100 cgattttcccataacaataggattgcaccaagg 132  Q
    |||||||||||||||||||||||||||||||||    
T  9034 cgattttcccataacaataggattgcaccaagg 9066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 88849 - 88811
Alignment:
Q  101 gattttcccataacaataggattgcaccaagggtcaacc 139  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  88849 gattttcccgtaaccataggattgcaccaagggtcaacc 88811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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