View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6163_low_1 (Length: 533)
Name: NF6163_low_1
Description: NF6163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6163_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 20173865 - 20174130
Alignment:
| Q |
17 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20173865 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtttt |
20173964 |
T |
|
| Q |
117 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtnnnnnnnnnnnnnnnnnnnctatatagtgaattgaattgctttgcttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20173965 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtgttgttgtgttgtgtctatatagtgaattgaattgctttgcttccc |
20174064 |
T |
|
| Q |
217 |
aagttcctagtgttgcatacattttgacaccttcctatttttctcgagtgaaaaatagtcaaaaca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20174065 |
aagttcctagtgttgcatacattttgacaccttcccatttttctcgagtgaaaaatagtcaaaaca |
20174130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 20218591 - 20218856
Alignment:
| Q |
17 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20218591 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtttt |
20218690 |
T |
|
| Q |
117 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtnnnnnnnnnnnnnnnnnnnctatatagtgaattgaattgctttgcttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20218691 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtgttgttgtgttgtgtctatatagtgaattgaattgctttgcttccc |
20218790 |
T |
|
| Q |
217 |
aagttcctagtgttgcatacattttgacaccttcctatttttctcgagtgaaaaatagtcaaaaca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20218791 |
aagttcctagtgttgcatacattttgacaccttcccatttttctcgagtgaaaaatagtcaaaaca |
20218856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 20174304 - 20174373
Alignment:
| Q |
456 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctgatgatgtc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20174304 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctcatgatgtc |
20174373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 20219030 - 20219099
Alignment:
| Q |
456 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctgatgatgtc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20219030 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctcatgatgtc |
20219099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 44303103 - 44303368
Alignment:
| Q |
17 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagcaacattaatctactaagatcctatggtttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44303103 |
agtttcttctgctcctggccttgcatgtattcctggtattttttgcagaacttcatgttttattataagtaacattaatctactaagatcctatggtttt |
44303202 |
T |
|
| Q |
117 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtnnnnnnnnnnnnnnnnnnnctatatagtgaattgaattgctttgcttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44303203 |
gtcataagaaactaaagggatgtggacaagaataatgtgattgattcggtttgtgttgttgtgttgtgtctatatagtgaattgaattgctttgcttccc |
44303302 |
T |
|
| Q |
217 |
aagttcctagtgttgcatacattttgacaccttcctatttttctcgagtgaaaaatagtcaaaaca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44303303 |
aagttcctagtgttgcatacattttgacaccttcccatttttctcgagtgaaaaatagtcaaaaca |
44303368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 44303542 - 44303611
Alignment:
| Q |
456 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctgatgatgtc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44303542 |
ggtatgatgtgattgtaatatatctacttctaaattctaattaacccactttcattgatctcatgatgtc |
44303611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University