View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6163_low_2 (Length: 429)

Name: NF6163_low_2
Description: NF6163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6163_low_2
NF6163_low_2
[»] chr6 (6 HSPs)
chr6 (11-410)||(11121072-11121471)
chr6 (18-109)||(1122202-1122293)
chr6 (23-112)||(18898897-18898986)
chr6 (23-65)||(19430326-19430368)
chr6 (23-65)||(22514533-22514575)
chr6 (30-103)||(22460488-22460561)
[»] chr7 (7 HSPs)
chr7 (11-410)||(21291962-21292373)
chr7 (23-112)||(9174884-9174973)
chr7 (23-112)||(21949747-21949836)
chr7 (23-112)||(6617022-6617111)
chr7 (23-112)||(46809031-46809120)
chr7 (23-112)||(34638492-34638581)
chr7 (23-112)||(42053618-42053707)
[»] chr4 (15 HSPs)
chr4 (116-325)||(37011223-37011431)
chr4 (15-326)||(29688941-29689262)
chr4 (150-404)||(29689319-29689573)
chr4 (31-112)||(27020261-27020342)
chr4 (23-112)||(36316211-36316300)
chr4 (23-112)||(36330420-36330509)
chr4 (23-112)||(34806279-34806368)
chr4 (23-112)||(39295911-39296000)
chr4 (23-112)||(5948179-5948268)
chr4 (29-97)||(53095208-53095276)
chr4 (20-103)||(33287453-33287536)
chr4 (16-103)||(37011111-37011198)
chr4 (15-84)||(1206544-1206612)
chr4 (27-96)||(34446702-34446771)
chr4 (18-97)||(32107443-32107525)
[»] chr8 (10 HSPs)
chr8 (111-373)||(3730155-3730416)
chr8 (15-112)||(18464711-18464808)
chr8 (11-112)||(31441781-31441882)
chr8 (178-320)||(11756441-11756579)
chr8 (23-112)||(12498713-12498802)
chr8 (23-112)||(18381357-18381446)
chr8 (23-112)||(39617899-39617988)
chr8 (30-85)||(22935494-22935548)
chr8 (23-112)||(6420900-6420989)
chr8 (24-75)||(15988073-15988124)
[»] chr2 (7 HSPs)
chr2 (161-301)||(12111633-12111773)
chr2 (29-112)||(4647944-4648027)
chr2 (11-112)||(19622557-19622658)
chr2 (23-85)||(30960858-30960919)
chr2 (23-85)||(7647590-7647651)
chr2 (24-94)||(17419091-17419161)
chr2 (23-112)||(40267805-40267894)
[»] chr5 (8 HSPs)
chr5 (23-112)||(40835033-40835122)
chr5 (29-112)||(1594553-1594636)
chr5 (23-112)||(5808339-5808428)
chr5 (23-112)||(16484938-16485027)
chr5 (23-112)||(39004874-39004963)
chr5 (23-112)||(39560908-39560997)
chr5 (23-76)||(641016-641069)
chr5 (23-112)||(16482489-16482578)
[»] chr3 (13 HSPs)
chr3 (23-112)||(3335962-3336051)
chr3 (24-97)||(25899153-25899226)
chr3 (23-112)||(33951682-33951771)
chr3 (23-103)||(47330053-47330133)
chr3 (23-112)||(22402398-22402487)
chr3 (23-112)||(37969168-37969257)
chr3 (23-100)||(4062400-4062477)
chr3 (23-120)||(4545679-4545776)
chr3 (23-112)||(28414066-28414155)
chr3 (35-97)||(23687689-23687750)
chr3 (35-97)||(24059926-24059987)
chr3 (11-84)||(46028310-46028382)
chr3 (20-84)||(587312-587374)
[»] chr1 (14 HSPs)
chr1 (23-112)||(2843948-2844037)
chr1 (23-112)||(38981055-38981144)
chr1 (23-112)||(2027818-2027907)
chr1 (23-112)||(18414527-18414616)
chr1 (23-112)||(28641572-28641661)
chr1 (23-112)||(32519751-32519840)
chr1 (23-112)||(45541457-45541546)
chr1 (23-112)||(49008163-49008252)
chr1 (23-112)||(8110684-8110773)
chr1 (11-84)||(32829231-32829303)
chr1 (23-103)||(24779852-24779932)
chr1 (11-84)||(5965116-5965188)
chr1 (12-84)||(15853336-15853407)
chr1 (11-70)||(36085789-36085848)
[»] scaffold0009 (1 HSPs)
scaffold0009 (23-112)||(194654-194743)
[»] scaffold0256 (1 HSPs)
scaffold0256 (23-112)||(4038-4127)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 11121471 - 11121072
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaa 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  11121471 cacagacagatgcttgaaagtggggagtggattcgaccgccaacacggtaattaacgaatccacacgcaccaaccgtttactgcgatgatcaatagcaaa 11121372  T
Q  111 ttctggcccacaacaagccatcatgcaagcacaacctaggcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgccaacacggtagc 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  11121371 ttctggcccacaacaagccatcatgcaagcacaacttaggcacaattatgaactccaaccttttaccaatggcaatgaatttgaccgccaacgcggtagc 11121272  T
Q  211 gaatacacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaatggagctgccatc 310  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  11121271 gaatacacccgcgaaccactcattgagacacaagacaacaagtttgtatgaccgtttctagcctatcaatctgaatactttgtcaaatggagctgccatc 11121172  T
Q  311 tgacagaacccacacatttagaacccgaaagtgcggaactgatttgaatcacaccaacccgtgtggtttttgccaaaagcgcgagaaccaaccatagcac 410  Q
    |||||||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  11121171 tgacagaacccacacgcttagaactcgaaagtgcagatctgatttgaataacaccaacccgtgtggttttttcccaaagcgcgagaaccaaccatagcac 11121072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 1122293 - 1122202
Alignment:
Q  18 agatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaa 109  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||||  ||||||||| ||| |||| ||||| | | ||||||| ||||||    
T  1122293 agattcttgagagtggggagtggattcgaccgccaacacggtaattagcgaatccacacgcaacaacggtttaatactatgatcactagcaa 1122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 18898986 - 18898897
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  18898986 cttgagagtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 18898897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 19430326 - 19430368
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaa 65  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  19430326 cttgagagtggggagtagattcaaccgccaacacggtaattaa 19430368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 22514533 - 22514575
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaa 65  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  22514533 cttgagagtggggagtagattcaaccgccaacacggtaattaa 22514575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 22460488 - 22460561
Alignment:
Q  30 gtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaa 103  Q
    ||||||||| |||||||||||||||||||||| ||  ||||| |||  |||||||| |||| |||||| |||||    
T  22460488 gtggggagtagattcaaccgccaacacggtaaatagcgaatcaacacacaccaaccatttaatgcgatcatcaa 22460561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 21292373 - 21291962
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaa 110  Q
    |||| ||||||||||| |||||||||||||| |  |||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||| | ||||    
T  21292373 cacaaacagatgcttgcaagtggggagtggacttgaccgccaacacggtaattaacgaattaacacgcaccaaccgtttactgcgatgatcaacaacaaa 21292274  T
Q  111 tt------------ctggcccacaacaagccatcatgcaagcacaacctaggcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgc 198  Q
    ||            || ||||||| ||||| ||||| ||||||||| ||||||| |||| |||||||||| ||||||||||||| |||||||  |||| |    
T  21292273 ttaatcagccatttctagcccacatcaagcgatcatacaagcacaaactaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccac 21292174  T
Q  199 caacacggtagcgaatacacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaat 298  Q
     ||||||| ||||| | ||||||||||||||||| ||||||| |||||| |||||||||| ||| |||| | ||| |||||| || || || ||||||||    
T  21292173 gaacacggcagcgagtccacccaccaaccactcactgagacagaagacatcaagtttgtacgactatttttggcccatcaatttggatcctccgtcaaat 21292074  T
Q  299 ggagctgccatctgacagaacccacacatttagaacccgaaagtgcggaactgatttgaatcacaccaacccgtgtggtttttgccaaaagcgcgagaac 398  Q
    ||||| |||||| |||| ||||||||   |  ||||||||||||||  ||||||||  ||||||||||||||||    |||||||| ||| | |||| ||    
T  21292073 ggagcggccatccgacataacccacatgctcggaacccgaaagtgcataactgattcaaatcacaccaacccgtacaatttttgcccaaaacacgagcac 21291974  T
Q  399 caaccatagcac 410  Q
    ||||||||||||    
T  21291973 caaccatagcac 21291962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 9174973 - 9174884
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| |||||||||||||||| |||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  9174973 cttgagagtggggagttgattcaaccgccaacatggtaattaacaaatccacacgcactaactgtttactgctatgatcaacatcaaatt 9174884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 21949836 - 21949747
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  21949836 cttgagagtggggagtagattcaaccaccaacacggtaattaaaaaatccacacgcacgaactgtttactgctatgatcaacatcaaatt 21949747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 6617022 - 6617111
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  6617022 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatt 6617111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 46809031 - 46809120
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  46809031 cttgagagtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 46809120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 34638581 - 34638492
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||   || |||| |||| ||| ||||||||| |||||||| | ||||||    
T  34638581 cttgagagtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaatt 34638492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 42053618 - 42053707
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||   || |||| |||| ||| ||||||||| |||||||| | ||||||    
T  42053618 cttgagagtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaatt 42053707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 37011223 - 37011431
Alignment:
Q  116 gcccacaacaagccatcatgcaagcacaacctaggcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgccaacacggtagcgaata 215  Q
    |||||||| |||| ||||  |||||||||| ||||||||||| | || ||||| |||| ||||||||||||||||  ||||||||||||| ||||||||     
T  37011223 gcccacaaaaagcgatcacacaagcacaacataggcacaagtctaaaatccaaccttt-accaatggcaatgaatccgaccgccaacacgatagcgaatc 37011321  T
Q  216 cacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaatggagctgccatctgaca 315  Q
    ||| ||||||||||||| | |||||| | ||| |||||||||| ||||||||||||||||||||||||||| || | |||||||||||| |||||  |||    
T  37011322 cactcaccaaccactcactaagacaccatacatcaagtttgtacgaccatttctagcctatcaatctgaatcctccatcaaatggagctaccatccaaca 37011421  T
Q  316 gaacccacac 325  Q
     |||||||||    
T  37011422 aaacccacac 37011431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 29688941 - 29689262
Alignment:
Q  15 gacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt-- 112  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||  ||||||| |||||||||||||||| || | ||||||      
T  29688941 gacaaatgcttgaaagtggggagtgggttcgaccgccaacacggtaattagcgaatccacgcgcaccaatcgtttactgcgatgattaacaacaaattaa 29689040  T
Q  113 ----------ctggcccacaacaagccatcatgcaagcacaacctaggcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgccaac 202  Q
              |  |||||||||| |   |||| | |||||||||||||||||||| ||| |||||| |||  |||||||||||||||   || |||||||    
T  29689041 tcagtcatttccagcccacaacatgtggtcatactagcacaacctaggcacaagtctgagctccaaccttc-accaatggcaatgaacc-gatcgccaac 29689138  T
Q  203 acggtagcgaatacacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaatggag 302  Q
    ||||||||| || |||| |||||||||||| ||| |||| |||||||||||||||| |  ||||| ||| |||||||| ||||| || |||||||| |||    
T  29689139 acggtagcggatccacctaccaaccactcactgacacactagacaacaagtttgtacggtcatttttagtctatcaatttgaatcctccgtcaaatagag 29689238  T
Q  303 ctgccatctgacagaacccacaca 326  Q
    | |||||| |||| ||||||||||    
T  29689239 ccgccatccgacataacccacaca 29689262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 404
Target Start/End: Original strand, 29689319 - 29689573
Alignment:
Q  150 gcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgccaacacggtagcgaatacacccaccaaccactcattgagacacaagacaac 249  Q
    |||||||| ||| |||||| |||  |||||||||||||||   |||||||||||||||||||||| |||| |||||||||||| ||| |||| |||||||    
T  29689319 gcacaagtctgagctccaaccttc-accaatggcaatgaacc-gaccgccaacacggtagcgaatccacctaccaaccactcactgacacactagacaac 29689416  T
Q  250 aagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaatggagctgccatctgacagaacccacacatttagaacccgaaa--gtgcgga 347  Q
    ||||||||| |  ||||| ||| |||||||| ||||| || |||||||| |||| |||||| |||| |||||||||| |  ||| | ||||  |||| ||    
T  29689417 aagtttgtacggtcatttttagtctatcaatttgaatcctccgtcaaatagagccgccatccgacataacccacacactcggaagctgaaaatgtgcaga 29689516  T
Q  348 actgatttgaatcacaccaacccgtgtggtttttgccaaaagcgcgagaaccaacca 404  Q
      ||| | ||||||||||||||||||  | ||||||| ||| |||||||||||||||    
T  29689517 tttgagtcgaatcacaccaacccgtgcaggttttgcccaaaacgcgagaaccaacca 29689573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 27020342 - 27020261
Alignment:
Q  31 tggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    |||||||| ||||||||||||||||||||||||||  ||| ||||||||| ||| ||||||||| |||||||| | ||||||    
T  27020342 tggggagtagattcaaccgccaacacggtaattaacaaattcacatgcactaactgtttactgctatgatcaacatcaaatt 27020261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 36316300 - 36316211
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  36316300 cttgagagtggggagtagattcaaccgccaacacggtaattaaaaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 36316211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 36330509 - 36330420
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  36330509 cttgagagtggggagtagattcaaccgccaacacggtaattaaaaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 36330420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 34806279 - 34806368
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||  ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  34806279 cttgagagtggggagcagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 34806368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 39295911 - 39296000
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  39295911 cttgagagtggggagtagattcaacagccaacacggtaattaacaaatccacacacactaactgtttactgctatgatcaacatcaaatt 39296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 5948179 - 5948268
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||   || |||| |||| ||| ||||||||| |||||||| | ||||||    
T  5948179 cttgagagtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaatt 5948268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 53095276 - 53095208
Alignment:
Q  29 agtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgat 97  Q
    ||||| |||||||| ||||| |||||||||||| | | ||||| ||||||||||||| |||||||||||    
T  53095276 agtggagagtggatccaaccaccaacacggtaaatgacgaatctacatgcaccaaccatttactgcgat 53095208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 33287536 - 33287453
Alignment:
Q  20 atgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaa 103  Q
    |||||||||| |||||| ||||||  |||||||||||||||| |||  ||||||| |||||||   |||||||||| |||||||    
T  33287536 atgcttgaaattggggactggatttgaccgccaacacggtaaataacaaatccacgtgcaccacttgtttactgcggtgatcaa 33287453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 37011111 - 37011198
Alignment:
Q  16 acagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaa 103  Q
    |||||||||||||||||||||||| |||  ||||  |||||  ||||||   ||||||| ||||||||| ||||||| ||||||||||    
T  37011111 acagatgcttgaaagtggggagtgaatttgaccgttaacacaataattagcaaatccacctgcaccaactgtttactacgatgatcaa 37011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 1206612 - 1206544
Alignment:
Q  15 gacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    |||| ||| |||||| ||||| ||| |||| |||||||||||||||||||| |||| ||| |||||||||    
T  1206612 gacaaatgtttgaaaatgggg-gtgaattcgaccgccaacacggtaattaacgaattcacgtgcaccaac 1206544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 34446702 - 34446771
Alignment:
Q  27 aaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcga 96  Q
    |||| ||| ||||||| | |||||||||||||||| ||| ||||||||   ||||||| |||||||||||    
T  34446702 aaagcgggaagtggatccgaccgccaacacggtaactaaagaatccacgatcaccaactgtttactgcga 34446771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 32107525 - 32107443
Alignment:
Q  18 agatgcttgaaagtggggagtggattcaac---cgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgat 97  Q
    |||| |||||||||||||||||||| |||    |||||||||||||| |||  |||||||  ||||||||| |||| ||||||    
T  32107525 agattcttgaaagtggggagtggatccaataatcgccaacacggtaaataacaaatccactcgcaccaaccatttattgcgat 32107443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 373
Target Start/End: Complemental strand, 3730416 - 3730155
Alignment:
Q  111 ttctggcccacaacaagccatcatgcaagcacaacctaggcacaagtatgaactccaaacttttaccaatggcaatgaatttgaccgccaacacggtagc 210  Q
    |||||||| ||||||||| ||||| ||||||| |||||||| |||||  ||||| ||| |||| ||||||||||||||||  |||||| ||||||||| |    
T  3730416 ttctggccaacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaaccttt-accaatggcaatgaatccgaccgcaaacacggtatc 3730318  T
Q  211 gaatacacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatcaatctgaatacttcgtcaaatggagctgccatc 310  Q
    ||||  |||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||| ||||||||  ||| || | |||||| || ||| |||     
T  3730317 gaatctacccaccaaccactaactgagacacaagacaacaagtttgtacgacaatttctagcatatcaatcaaaatcctccctcaaatagaactgtcatt 3730218  T
Q  311 tgacagaacccacacatttagaacccgaaagtgcggaactgatttgaatcacaccaacccgtg 373  Q
    ||||| ||| |||||  |  |||| ||||||||  || |||| | || |||||||||||||||    
T  3730217 tgacataactcacacgctcggaacacgaaagtgaagatctgagtcgagtcacaccaacccgtg 3730155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 18464808 - 18464711
Alignment:
Q  15 gacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||  |||||| | ||||||||||||||||||  |||||||    
T  18464808 gacagatgcttgaaagtggggagtggattcgaccgccgacacggtaaataacgaatccacgcgcaccacctgtttactgcgatgatcaacggcaaatt 18464711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 31441781 - 31441882
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaa 110  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||| || |||||  |||||||| ||||| | ||||||||||||| ||||| ||||||    
T  31441781 cacagacagattcttgctagtggggagtggattcaaccgccaacacagtcattaacaaatccacacgcacctatcgtttactgcgatcatcaacagcaaa 31441880  T
Q  111 tt 112  Q
    ||    
T  31441881 tt 31441882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 320
Target Start/End: Original strand, 11756441 - 11756579
Alignment:
Q  178 aatggcaatgaatttgaccgccaacacggtagcgaatacacccaccaaccactcattgagacacaagacaacaagtttgtatgaccatttctagcctatc 277  Q
    ||||||||| | | |||||||||||||||||||| || |||| |||||||||||| ||||    || ||||||||||| || | |||||||||||||||     
T  11756441 aatggcaatcagtctgaccgccaacacggtagcggatccaccaaccaaccactcactgag----aaaacaacaagtttatacggccatttctagcctatt 11756536  T
Q  278 aatctgaatacttcgtcaaatggagctgccatctgacagaacc 320  Q
    ||||| ||  ||||||  | || |||||||| | |||||||||    
T  11756537 aatcttaaaccttcgttgactgaagctgccaaccgacagaacc 11756579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 12498802 - 12498713
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  12498802 cttgagagtgaggagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 12498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 18381446 - 18381357
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  18381446 cttgagagtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 18381357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 39617988 - 39617899
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  39617988 cttgagagtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 39617899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 22935548 - 22935494
Alignment:
Q  30 gtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaacc 85  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||    
T  22935548 gtggggagtggattcgaccgccaacacggtagttaacgaatccacat-caccaacc 22935494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 6420900 - 6420989
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||  ||| ||||||||||||||||||||||||||   || |||| |||| ||| ||||||||| |||||||| | ||||||    
T  6420900 cttgagagtggaaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaatt 6420989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 15988073 - 15988124
Alignment:
Q  24 ttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccaca 75  Q
    |||| ||||||||||| |||| |||||||||||||||||||  |||||||||    
T  15988073 ttgagagtggggagtgaattcgaccgccaacacggtaattagagaatccaca 15988124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 301
Target Start/End: Original strand, 12111633 - 12111773
Alignment:
Q  161 aactccaaacttttaccaatggcaatgaatttgaccgccaacacggtagcgaatacacccaccaaccactcattgagacacaagacaacaagtttgtatg 260  Q
    |||||||| ||||||| ||||| ||| ||| |||| |||||||| ||||||||| |||| ||||| |||||  |||||||||| ||| |||||||  | |    
T  12111633 aactccaaccttttacaaatggtaataaatctgactgccaacaccgtagcgaatccaccaaccaatcactcgctgagacacaaaacatcaagtttaaacg 12111732  T
Q  261 accatttctagcctatcaatctgaatacttcgtcaaatgga 301  Q
     ||||||||||||||||||||| | | || |||||||||||    
T  12111733 gccatttctagcctatcaatcttactcctccgtcaaatgga 12111773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 4648027 - 4647944
Alignment:
Q  29 agtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  4648027 agtggggagtagattcaaccgccaacacggtaattaacaaatccacatgcactaactgtttactgctatgatcaacatcaaatt 4647944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 19622557 - 19622658
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaa 110  Q
    |||| |||||| ||||| |||||||||||||||  ||| |||||||||||||||| |||||||||  ||||||||  || ||||||||||| ||||||||    
T  19622557 cacaaacagattcttgagagtggggagtggatttgaccaccaacacggtaattaacgaatccacacacaccaaccagttgctgcgatgatctatagcaaa 19622656  T
Q  111 tt 112  Q
    ||    
T  19622657 tt 19622658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 30960858 - 30960919
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaacc 85  Q
    ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  30960858 cttgagagtggggagcggattcgaccgccaacacggtaattaacgaatccacat-caccaacc 30960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 7647651 - 7647590
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaacc 85  Q
    ||||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||||||    
T  7647651 cttgagagtggggagtgcattcgaccgccaacacggtagttaacgaatccacat-caccaacc 7647590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 17419091 - 17419161
Alignment:
Q  24 ttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgc 94  Q
    |||| ||||| ||||| |||| |||||||||||||||||||  ||||||||| ||||||||  ||||||||    
T  17419091 ttgagagtggcgagtgaattcgaccgccaacacggtaattagcgaatccacacgcaccaacaatttactgc 17419161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 40267805 - 40267894
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| |||| |||||||||||||||||||||  ||| |||| |||| ||  ||||||||| |||||||| | ||||||    
T  40267805 cttgagagtgaggagtagattaaaccgccaacacggtaattaacaaattcacacgcactaattgtttactgctatgatcaacatcaaatt 40267894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 40835033 - 40835122
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  40835033 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacatgcactaacagtttactgctatgatcaacatcaaatt 40835122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 1594636 - 1594553
Alignment:
Q  29 agtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    |||| ||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  1594636 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaatt 1594553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 5808428 - 5808339
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  5808428 cttgagagtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 5808339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 16484938 - 16485027
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  16484938 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatt 16485027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 39004874 - 39004963
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| |||||||||| |||||||||||||||  |||||||| |||| ||| |||||| || |||||||| | ||||||    
T  39004874 cttgagagtggggagtagattcaaccgtcaacacggtaattaacaaatccacacgcactaactgtttacagctatgatcaacatcaaatt 39004963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 39560997 - 39560908
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  |||||| | |||| ||| ||||||||| |||||||| | ||||||    
T  39560997 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccatacgcactaacagtttactgctatgatcaacatcaaatt 39560908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 641069 - 641016
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacat 76  Q
    ||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  641069 cttgagagtggggagtggattcgaccgccaacacggtagttaacgaatccacat 641016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 16482489 - 16482578
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||   || |||| |||| ||| ||||||||| |||||||| | ||||||    
T  16482489 cttgagagtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaatt 16482578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 3336051 - 3335962
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  3336051 cttgagagtggggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaactgtttactgctatgatcaacatcaaatt 3335962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 25899226 - 25899153
Alignment:
Q  24 ttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgat 97  Q
    |||| ||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  25899226 ttgagagtggagagtagattcgaccgccaacacggtaattaatgaaaccacatgcaccaaccgtttagtgcgat 25899153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 33951771 - 33951682
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  33951771 cttgagagtggggagtagattcaaccgccaacacggtaattaaaaaatccacacgcactaactgtttactgctatgatcaacatcaaatt 33951682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 47330133 - 47330053
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaa 103  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||||| ||||||||    
T  47330133 cttgagagtggggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaactgtttactgctatgatcaa 47330053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 22402398 - 22402487
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  22402398 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaatt 22402487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 37969168 - 37969257
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  37969168 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatt 37969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 4062477 - 4062400
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgat 100  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||    
T  4062477 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgat 4062400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 4545776 - 4545679
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaattctggccca 120  Q
    ||||| |||||||| ||||||| |||||||||| ||||| ||  ||||| |||   ||||||| ||||||||||||||||| ||| | ||||||||||    
T  4545776 cttgagagtggggattggattcgaccgccaacatggtaaatagcgaatcaacacataccaaccatttactgcgatgatcaacagccatttctggccca 4545679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 28414155 - 28414066
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||| ||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  28414155 cttgagagtgtggagtagattcaaccgccaacacagtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatt 28414066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 23687689 - 23687750
Alignment:
Q  35 gagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgat 97  Q
    |||||||||| |||| |||||| |||||| ||||||| ||||||||||||| |||||||||||    
T  23687689 gagtggattcgaccggcaacacagtaattgatgaatc-acatgcaccaaccatttactgcgat 23687750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 24059926 - 24059987
Alignment:
Q  35 gagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgat 97  Q
    |||||||||| |||| |||||| |||||| ||||||| ||||||||||||| |||||||||||    
T  24059926 gagtggattcgaccggcaacacagtaattgatgaatc-acatgcaccaaccatttactgcgat 24059987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 46028382 - 46028310
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    |||||||| |||||||||| | ||| |||||||| ||||||||||| |||||||| |||| |||| ||||||||    
T  46028382 cacagacaaatgcttgaaaataggg-gtggattcgaccgccaacactgtaattaacgaattcacaagcaccaac 46028310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 587312 - 587374
Alignment:
Q  20 atgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    |||||||||| |||||  || |||| || |||||||||||||||| ||||||||| |||||||||    
T  587312 atgcttgaaaatgggg--tgaattcgacggccaacacggtaattagtgaatccacgtgcaccaac 587374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 2843948 - 2844037
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  ||| ||||||||| ||| ||||||||| |||||||| | ||||||    
T  2843948 cttgagagtggggagtagattcaaccgccaacacggtaattaacaaattcacatgcactaacagtttactgctatgatcaacatcaaatt 2844037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 38981144 - 38981055
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| |||||||||||||||||| |||||||  ||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  38981144 cttgagagtggggagtagattcaaccgccaacacgttaattaacaaatccacatgcactaactgtttactgctatgatcaacatcaaatt 38981055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 2027818 - 2027907
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  |||||||| |||| ||| ||||||| | |||||||| | ||||||    
T  2027818 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactactatgatcaacatcaaatt 2027907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 18414527 - 18414616
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  18414527 cttgagagtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 18414616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 28641661 - 28641572
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  28641661 cttgagagtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 28641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 32519840 - 32519751
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  32519840 cttgagagtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 32519751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 45541457 - 45541546
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  ||| ||| ||||||||| |||||||| | ||||||    
T  45541457 cttgagagtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatt 45541546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 49008163 - 49008252
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||| ||||| |||||||||||||| |||||||||||  |||||||| |||| ||| ||||||||| |||||||| | ||||||    
T  49008163 cttgagagtgtggagtagattcaaccgccaatacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaatt 49008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 8110684 - 8110773
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||||||| ||||||||||||||||||||||||||  ||| |||| |||| ||   |||||||| |||||||| | ||||||    
T  8110684 cttgagagtggggagtagattcaaccgccaacacggtaattaacaaattcacacgcactaaatatttactgctatgatcaacatcaaatt 8110773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 32829303 - 32829231
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    |||||||| |||||||||| ||||| |||||||| |||||||||||||||||||| |||| |||  ||||||||    
T  32829303 cacagacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 32829231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 24779852 - 24779932
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaa 103  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||  |||||| | |||| ||| ||||||| | ||||||||    
T  24779852 cttgagagtggggagtagattcaaccgctaacacggtaattaacaaatccagacgcactaactgtttacttctatgatcaa 24779932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 5965188 - 5965116
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    |||||||| |||||||||| ||||| ||| |||| |||||||||||||||||||| |||| |||  ||||||||    
T  5965188 cacagacaaatgcttgaaaatgggg-gtgaattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 5965116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 15853336 - 15853407
Alignment:
Q  12 acagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaac 84  Q
    ||||||| |||||||||| | ||| |||||||| |||||||||||||||||||| |||| |||  ||||||||    
T  15853336 acagacaaatgcttgaaaataggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 15853407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 36085789 - 36085848
Alignment:
Q  11 cacagacagatgcttgaaagtggggagtggattcaaccgccaacacggtaattaatgaat 70  Q
    |||||||||||||||||||||| |||||| |||| |||| ||| ||||||| ||| ||||    
T  36085789 cacagacagatgcttgaaagtgtggagtgaattcgaccgtcaatacggtaaataacgaat 36085848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 194743 - 194654
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||  ||| |||| |||| ||| ||||||||| |||||||| | ||||||    
T  194743 cttgagagtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaatt 194654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 4127 - 4038
Alignment:
Q  23 cttgaaagtggggagtggattcaaccgccaacacggtaattaatgaatccacatgcaccaaccgtttactgcgatgatcaatagcaaatt 112  Q
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T  4127 cttgagagtggagagaagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttatttctatgatcaacatcaaatt 4038  T

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